Nanoparticle-based optical probes have been designed as a vehicle for detecting antigens using Raman and UV-Vis spectroscopy. Here we describe a protocol for preparing such probes for a UV-Vis/Raman spectroscopy immunoassay in such a way to incorporate future multiplexing capabilities.
Immunoassays are used to detect proteins based on the presence of associated antibodies. Because of their extensive use in research and clinical settings, a large infrastructure of immunoassay instruments and materials can be found. For example, 96- and 384-well polystyrene plates are available commercially and have a standard design to accommodate ultraviolet-visible (UV-Vis) spectroscopy machines from various manufacturers. In addition, a wide variety of immunoglobulins, detection tags, and blocking agents for customized immunoassay designs such as enzyme-linked immunosorbent assays (ELISA) are available.
Despite the existing infrastructure, standard ELISA kits do not meet all research needs, requiring individualized immunoassay development, which can be expensive and time-consuming. For example, ELISA kits have low multiplexing (detection of more than one analyte at a time) capabilities as they usually depend on fluorescence or colorimetric methods for detection. Colorimetric and fluorescent-based analyses have limited multiplexing capabilities due to broad spectral peaks. In contrast, Raman spectroscopy-based methods have a much greater capability for multiplexing due to narrow emission peaks. Another advantage of Raman spectroscopy is that Raman reporters experience significantly less photobleaching than fluorescent tags1. Despite the advantages that Raman reporters have over fluorescent and colorimetric tags, protocols to fabricate Raman-based immunoassays are limited. The purpose of this paper is to provide a protocol to prepare functionalized probes to use in conjunction with polystyrene plates for direct detection of analytes by UV-Vis analysis and Raman spectroscopy. This protocol will allow researchers to take a do-it-yourself approach for future multi-analyte detection while capitalizing on pre-established infrastructure.
Typical sandwich immunoassays indirectly detect the presence of an antigen using two antibodies. The capture antibody is bound to a solid surface and forms an antibody-antigen complex when in proximity to an appropriate antigen. A detection antibody is then introduced and binds to the antigen. After washing, the antibody/antigen/antibody complex remains and is detected by the labeled detection antibody as demonstrated in Figure 1A. Typical detection is done by a fluorescent or colorimetric detector, limiting multiplexing to 10 analytes due to broad spectral peaks2,3. In contrast, Raman-based systems have much narrower emission peaks resulting in enhanced multiplexing capabilities with sources claiming simultaneous detection of up to 100 analytes2,3.
Many literature sources are available which cover important aspects related to immunoassays4–6 such as step-by-step details to create personalized ELISA kits. Unfortunately, these protocols are for fluorescent or colorimetric detection, limiting multiplexing capability of customized immunoassays. To address this need, we present a detailed procedure to fabricate the UV-Vis/Raman immunoassay published previously7 for a direct immunoassay as illustrated in Figure 1B.
This protocol includes the fabrication of functionalized gold nanoparticle-based probes, illustrated in Figure 2. The procedure to make the Raman/UV-Vis probes begins by binding Raman reporters to the surface of gold nanoparticles (AuNPs). The AuNPs are then functionalized with antibodies that are associated with polyethylene glycol (PEG). Remaining binding sites on the AuNPs are blocked by binding methoxy polyethylene glycol thiol (mPEG-SH) to AuNPs to prevent subsequent non-specific binding during analysis. The prepared AuNP probes are tested by binding to antigens fixed to the wells of a polystyrene plate as illustrated in Figure 1B. Upon washing the plate, the AuNP probes are detected using UV-Vis spectroscopy while the associated Raman reporters are detected with Raman spectroscopy. Combining UV-Vis and Raman spectral data provides two methods of analyses, enhancing the capabilities of this immunoassay.
1. Preparation of Buffers
2. Prepare UV-Vis/Raman Probes
Volumes to add of each component (ml) | |||
DTTC final concentration (mM) | DTTC working solution (200 mM) | AuNP | Water |
0.2 | 0.1 | 20 | 79.9 |
0.6 | 0.3 | 20 | 79.7 |
1 | 0.5 | 20 | 79.5 |
2 | 1.0 | 20 | 79 |
5 | 2.5 | 20 | 77.5 |
7 | 3.5 | 20 | 76.5 |
10 | 5.0 | 20 | 75 |
Table 1. DTTC dilution example. Various dilutions of DTTC and the associated volumes of stock DTTC, gold nanoparticle solution, and water.
3. Immunoassay Plate Preparation
In this study, 60 nm gold particles were used for UV-Vis spectroscopy. UV-Vis absorption spectra from 400 to 700 nm were collected and the peak areas for each AuNP concentration were determined using an open source spectral analysis software8. Prior to peak integration, the collected spectra underwent baseline correction using a three-point polynomial fit. Peak areas were used to generate a logarithmic calibration curve as demonstrated in Figure 4. It should be noted that Figures 4 and 5 incorporated logarithmic calibration curves. The use of non-linear calibration curves can significantly expand the dynamic range of an assay and has become an accepted practice for various immunoassays that require low range detection capabilities9,10.
To quantitatively assess the sensitivity of the assay, the limit of the blank (LOB) and the lower limit of detection (LLOD) was calculated as follows
where standard deviation of the blank and of the lowest sample concentration is σBLANK and σLow, respectively, while is the mean value of the blank11,12. Using these definitions, as well as the generated 4-parameter logistic calibration curve, the LLOD for UV-Vis was 3.5 pM of gold nanoparticles.
Using a Raman spectroscopy setup detailed previously7, a 785 nm inverted Raman microscope was used to collect spectra from the DTTC Raman reporter associated with the functionalized immunoassay plate. Operating parameters included 7 mW laser power and a 10 sec acquisition time. Spectra underwent baseline correction (11th order polynomial) and peak integration. Figure 5 shows the 4-parameter logistic calibration curve generated for the DTTC peak areas for the 493 cm-1 and 508 cm-1 DTTC peaks. As the exact concentration of Raman reporter bound to the AuNP surface was unknown, the calibration curve was based on AuNP concentration. Using the equations described above, the LLOD was determined to be 1.7 pM of AuNP.
Figure 1. Illustration of direct and indirect immunoassay analysis. Illustration of indirect (A) and direct (B) detection schemes for immunoassays. Please click here to view a larger version of this figure.
Figure 2. Nanoparticle probe fabrication illustration. Process of functionalizing Raman/UV-Vis probes for immunoassays. Please click here to view a larger version of this figure. Please click here to view a much larger version of this figure.
Figure 3. Prepared immunoassay plate. Image of a prepared immunoassay plate. Rows A through E are tests samples while rows F through H are control samples. Column 1 contains the undiluted nanoparticles and every subsequent column has half the concentration of AuNP probes. Please click here to view a larger version of this figure.
Figure 4. UV-Vis calibration curve for immunoassay using nanoparticle probes. Logarithmic calibration curve for the UV-Vis peak areas to nanoparticle concentration. The fitted line is a 4-parameter logistic (4PL) curve. Error bars indicate the peak area standard deviation. Please click here to view a larger version of this figure. Please click here to view a much larger version of this figure.
Figure 5. Raman calibration curve for immunoassay using nanoparticle probes. Calibration curve correlating Raman reporter peak area to gold nanoparticle concentration. The fitted line is a 4-parameter logistic (4PL) curve. Error bars indicate the peak area standard deviation. Please click here to view a larger version of this figure. Please click here to view a much larger version of this figure.
In the detailed protocol, there are several critical points to address. One issue is the choice of Raman reporter and gold nanoparticle. Although the protocol was written to be adapted for individual use, the Raman reporter DTTC was used as an example. DTTC is a positively charged reporter and binds to negatively charged surfaces such as citrate capped AuNPs. This protocol can be adapted for negatively charged reporters by using gold nanoparticles with a positive surface charge. For example, polyethyleneimine (PEI) capped AuNPs provide a positive surface charge and better binding with negatively-charged reporters.
Maintaining the balance between proteins and nanoparticles is a critical step of this protocol. This balance is achieved by adding PEGylated antibodies at an optimized antibody to gold nanoparticle ratio of 200:1. If the PEGylated antibodies are added to the gold nanoparticle solution at a significantly higher ratio than this, ion-induced particle aggregation may occur. Alternatively, at too small of a ratio, protein aggregation and insolubility would occur. This ratio must be determined in each individual case.
Another critical protocol step is the conjugation of OPSS-PEG-NHS to the antibody. This step is preceded by suspending OPSS-PEG-NHS in sodium bicarbonate where the NHS group binds to the antibody. This conjugation step competes with the unfavorable hydrolysis reaction as detailed previously7. The hydrolysis reaction is more likely to happen over time, and as such, the OPSS-PEG-NHS to antibody binding should be performed immediately.
The end product of the protocol is an immunoassay which can be tested for sensitivity by construction of a calibration curve using UV-Vis and Raman spectroscopy. The results indicate that the immunoassay is comparable to other bioassays13–17 which have detection limits of 1 pM. Not only is the Raman immunoassay sensitivity competitive with other bioassays, it has the potential for improved sensitivity by means of surface-enhanced Raman spectroscopy (SERS). SERS incorporates the use of gold nanoparticles or a roughened gold surface to enhance the Raman emission. As this protocol already includes the use of gold-nanoparticles probes, it is well suited for development into a SERS immunoassay. In the future, this technique could be used for development of a light scattering immunoassay that could be used to detect many protein analytes simultaneously. As biomarker profiling becomes increasingly important for the diagnosis and treatment of a wide variety of diseases, this technique may have profound clinical applications.
Common problems associated with this protocol include aggregation of gold nanoparticles, insufficient binding of blocking proteins, binding of non-specific proteins, and a weak Raman signal. These problems are listed in Table 2 along with the possible cause of the problem and action steps to address each problem. Other problems can arise due to limitations of the protocol. First, this protocol is limited to AuNP concentrations up to 5 x 1012 particle/ml as higher concentrations tend to cause aggregation. The technique relies on stable, unaggregated nanoparticles for estimation of the nanoparticle concentrations. If there is aggregation, the estimation of nanoparticle concentration will be biased. The protocol is also limited to Raman reporters with peaks strong enough to overcome the polystyrene background and are unique from polystyrene. Lastly, the use of traditional 96-well plates limit the protocol to use of an inverted Raman microscope due to the height of the plates. Otherwise, a low magnification must be used for the Raman microscope objective to accommodate the 96-well plate height.
Symptom | Probable Cause | Corrective Action |
Gold nanoparticles aggregate after centrifugation and resuspension. | The Raman reporter concentration is too high. | Test a range of Raman reporter concentrations as specified in section 2.2 or this protocol. |
The antibody to AuNP ratio is too high. | Reduce the number of PEGylated antibodies bound to the nanoparticle surface to increase particle stability. | |
The mPEG-SH blocking agent isn't binding to the AuNP surface. | Prepare mPEG-SH solution fresh prior to nanoparticle blocking. | |
Non-specific binding to the immunoassay plate surface | The immunoassay plate is insufficiently blocked. | Prepare blocking solution fresh prior to plate functionalization. |
The molecular weight of mPEG-SH is not large enough. | Ensure that the mPEG-SH molecule used for blocking has a molecular weight of 5,000 kDa or greater. | |
Weak or absent Raman signal | The Raman reporter is not binding to the particle surface. | Ensure the Raman reporter is allowed to bind for at least 30 minutes prior to addition of the PEGylated antibody. |
The molecular weight of mPEG-SH is not large enough. | Ensure that the nanoparticle capping agent has the appropriate charge for ionic Raman reporter binding. |
Table 2. Troubleshooting for common problems. List of common problems encountered during the protocol with the associated causes and corrective action items.
In this manuscript, we have presented a protocol for custom fabrication of a nanoparticle-probe based immunoassay for analysis using UV-Vis/Raman spectroscopy. The protocol includes functionalization of gold nanoparticles with Raman reporters and immunoglobulins for direct detection of antigens bound to a polystyrene plate. The protocol can be adapted to suit a particular Raman reporter and associated excitation wavelength. Gold nanoparticle shape and size can also be altered. However, solution ratios for appropriate binding will vary according to the Raman reporter used as well as the nanoparticle size, shape, and manufacturer. The protocol has been written to cue researchers of when solution ratios must be determined for each unique arrangement and thereby allow for custom fabrication according to research needs. Unlike the typical fluorescent/colorimetric immunoassay protocols, this protocol holds the potential for greater multiplexing capabilities while capitalizing on a pre-existing infrastructure.
The authors have nothing to disclose.
This work was supported by a Research Catalyst Award from Utah State University. The authors would like to thank Annelise Dykes, Cameron Zabriskie, and Donald Wooley for their contributions.
60nm Gold Nanoparticle | Ted Pella, Inc. | 15708-6 | These are citrate capped gold nanoparticles. Please see Discussion for relationship between Raman reporter and AuNP surface charge and its imporance to proper selection of AuNP and/or Raman reporter. |
Sodium Bicarbonate | Fisher Scientific | S233-500 | |
Methanol | Pharmco-Aaper | 339000000 | |
Tris Buffered Saline (10X) pH 7.5 | Scy Tek | TBD999 | |
Bottle Top Filtration Unit | VWR | 97066-202 | |
Tween 20 (polysorbate 20) | Scy Tek | TWN500 | Used as an emulsifying agent for washing steps. |
Phosphate Buffered Saline 10X Concentrate, pH 7.4 | Scy Tek | PBD999 | |
Protein LoBind Tube 2.0 mL | Eppendorf Tubes | 22431102 | LoBind tubes prevent binding of proteins and AuNPs to surfaces of the tubes. |
Protein LoBind Tube 0.5 mL | Eppendorf Tubes | 22431064 | LoBind tubes prevent binding of proteins and AuNPs to surfaces of the tubes. |
Microplate Devices UniSeal | GE Healthcare | 7704-0001 | Used for sealing and storing functionalized plates. |
Assay Plate, With Low Evaporation Lid, 96 Well Flat Bottom | Costar | 3370 | |
HPLC grade water | Sigma Aldrich | 270733-4L | |
3,3′-Diethylthiatricarbocyanine iodide (DTTC) | Sigma Aldrich | 381306-250MG | Raman reporter |
mPEG-Thiol, MW 5,000 – 1 gram | Laysan Bio, Inc. | MPEG-SH-5000-1g | |
OPSS-PEG-SVA, MW 5,000 – 1 gram | Laysan Bio, Inc. | OPSS-PEG-SVA-5000-1g | OPSS-PEG-SVA has an NHS end. |
Mouse IgG, Whole Molecule Control | Thermo Fisher Scientific | 31903 | Antigen |
Goat anti-Mouse IgG (H+L) Cross Adsorbed Secondary Antibody | Thermo Fisher Scientific | 31164 | Antibody |
Human Serum Albumin Blocking Solution | Sigma Aldrich | A1887-1G | Bovine serum albumin can be used instead. |
In-house built 785nm inverted Raman microscope unit | N/A | N/A | An inverted Raman microscope is best for proper focusing onto surface of the well plate. Otherwise a very low magnification will be used due to height of the 96-well plate. An in-house built system was used as it was cheaper than buying from a vendor. However, any commercially available inverted Raman microscope system can be used. |
Mini Centrifuge | Fisher Schientific | 12-006-900 | |
UV-Vis Spectrophotometer | Thermo Scientific | Nanodrop 2000c | |
UV-Vis Spectrophotometer | BioTek | Synergy 2 | |
Desalting Columns | Thermor Scientific | 87766 |