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Un gasoducto de bioinformática para analizar de forma precisa y eficiente los transcriptomes de microRNA en las plantas
1Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center,Beijing Academy of Agriculture and Forestry Sciences, 2State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, School of Advanced Agricultural Sciences and School of Life Sciences,Peking University
Chapters
- 00:04Title
- 01:15Installation and Testing
- 02:56Identifying Novel MicroRNAs (miRNAs)
- 03:33Reference Index Building
- 04:42Results: Representative miRDP2 Performance
- 05:45Conclusion
Una canalización bioinformática, a saber, miRDeep-P2 (miRDP2 para abreviar), con criterios de miRNA de plantas actualizados y un algoritmo revisado, podría analizar con precisión y eficiencia transcriptometrías de microARN en plantas, especialmente para especies con genomas complejos y grandes.
Tags
Bioinformatics PipelineMicroRNA TranscriptomesPlantsMiRDeep2Plant MicroRNAsTranscriptional RegulatorsPlant DevelopmentEnvironmental ChallengesFalse PositivesProcessing TimeHigh Confidence MicroRNA AnnotationGenome FunctionMiRDeep2 PipelineArabidopsis ThalianaGenome Reference IndexNoncoding RNA Reference IndexDeep Sequencing ReadsAdaptersFASTA Identifiers
