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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

JoVE Journal
Genética

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JoVE Journal Genética

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

1,842 Views

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08:03 min

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December 07, 2021

DOI:

10.3791/63115-v

DOI:

10.3791/63115-v

•

08:03 min

December 07, 2021

•

3 Views

Natasha Pavlovikj*¹, Joao Carlos Gomes-Neto*^2,3, Andrew K. Benson³

¹Department of Computer Science and Engineering,University of Nebraska-Lincoln, ²Department of Food Science and Technology,University of Nebraska-Lincoln, ³Nebraska Food for Health Center,University of Nebraska-Lincoln

Tags

Heuristic Mining Hierarchical Genotypes Accessory Genome Loci Bacterial Populations ProkEvo Computational Platform Scalable Analysis Pan-genomic Content Genotype Mapping Pathogenic Lineages Public Health Surveillance Bacterial Population Genomics Gigi Tree Phylogenetic Tree Data Aggregation

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