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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
JoVE Journal
遺伝学
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JoVE Journal 遺伝学
Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

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08:03 min

December 07, 2021

DOI:

08:03 min
December 07, 2021

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概要

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This analytical computational platform provides practical guidance for microbiologists, ecologists, and epidemiologists interested in bacterial population genomics. Specifically, the work presented here demonstrated how to perform: i) phylogeny-guided mapping of hierarchical genotypes; ii) frequency-based analysis of genotypes; iii) kinship and clonality analyses; iv) identification of lineage differentiating accessory loci.

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