JOVE JOURNAL

Biology

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Journal (Biology)

Generating the Transcriptional Regulation View of Transcriptomic Features for Prediction Task and Dark Biomarker Detection on Small Datasets

Kewei Li¹, Yusi Fan¹, Yaqing Liu¹, Hongmei Liu², Gongyou Zhang², Meiyu Duan¹, Lan Huang¹, Fengfeng Zhou¹

¹College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education,Jilin University, ²School of Biology and Engineering,Guizhou Medical University

Journal (Biology)

Generating the Transcriptional Regulation View of a Transcriptome Dataset

Kewei Li¹, Yusi Fan¹, Yaqing Liu¹, Hongmei Liu², Gongyou Zhang², Meiyu Duan¹, Lan Huang¹, Fengfeng Zhou¹

¹College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education,Jilin University, ²School of Biology and Engineering,Guizhou Medical University

Journal (Biology)

Isolating Campylobacter spp. and Selective Enrichment of Campylobacter from Raw Meat

Yiping He¹, Joseph Capobianco¹, Cheryl M. Armstrong¹, Chin-Yi Chen¹, Katrina Counihan¹, Joe Lee¹, Sue Reed¹, Shannon Tilman¹

¹Characterization and Interventions for Foodborne Pathogens Research Unit, Eastern Regional Research Center,Agricultural Research Service (ARS), United States Department of Agriculture (USDA)

Journal (Biology)

Isolation and Purification of Campylobacter jejuni and Campylobacter coli from Raw Chicken

Yiping He¹, Joseph Capobianco¹, Cheryl M. Armstrong¹, Chin-Yi Chen¹, Katrina Counihan¹, Joe Lee¹, Sue Reed¹, Shannon Tilman¹

¹Characterization and Interventions for Foodborne Pathogens Research Unit, Eastern Regional Research Center,Agricultural Research Service (ARS), United States Department of Agriculture (USDA)

Journal (Biology)

Detection and Isolation of Campylobacter spp. from Raw Meat

Yiping He¹, Joseph Capobianco¹, Cheryl M. Armstrong¹, Chin-Yi Chen¹, Katrina Counihan¹, Joe Lee¹, Sue Reed¹, Shannon Tilman¹

¹Characterization and Interventions for Foodborne Pathogens Research Unit, Eastern Regional Research Center,Agricultural Research Service (ARS), United States Department of Agriculture (USDA)

Journal (Biology)

Identification of Campylobacter jejuni and Campylobacter coli Species Isolated from Raw Chicken

Yiping He¹, Joseph Capobianco¹, Cheryl M. Armstrong¹, Chin-Yi Chen¹, Katrina Counihan¹, Joe Lee¹, Sue Reed¹, Shannon Tilman¹

¹Characterization and Interventions for Foodborne Pathogens Research Unit, Eastern Regional Research Center,Agricultural Research Service (ARS), United States Department of Agriculture (USDA)

Journal (Biology)

Cost-Efficient Transcriptomic-Based Drug Screening

Jacqueline Leidner^1,2, Heidi Theis³, Michael Kraut³, Alice Ragogna¹, Marc Beyer^1,3,4, Joachim Schultze^1,2,3, Jonas Schulte-Schrepping^1,2, Caterina Carraro^1,2, Lorenzo Bonaguro^1,2

¹Systems Medicine,German Center for Neurodegenerative Diseases (DZNE) eV., ²Genomics & Immunoregulation, LIMES Institute,University of Bonn, ³PRECISE Platform for Single Cell Genomics and Epigenomics,DZNE and University of Bonn, ⁴Immunogenomics & Neurodegeneration,German Center for Neurodegenerative Diseases (DZNE) eV.

Journal (Biology)

Drug Screening Using Peripheral Blood Mononuclear Cells (PBMCs) and Cell Lysate Preparation for mRNA Sequencing

Jacqueline Leidner^1,2, Heidi Theis³, Michael Kraut³, Alice Ragogna¹, Marc Beyer^1,3,4, Joachim Schultze^1,2,3, Jonas Schulte-Schrepping^1,2, Caterina Carraro^1,2, Lorenzo Bonaguro^1,2

¹Systems Medicine,German Center for Neurodegenerative Diseases (DZNE) eV., ²Genomics & Immunoregulation, LIMES Institute,University of Bonn, ³PRECISE Platform for Single Cell Genomics and Epigenomics,DZNE and University of Bonn, ⁴Immunogenomics & Neurodegeneration,German Center for Neurodegenerative Diseases (DZNE) eV.

Journal (Biology)

cDNA Library Preparation from the Drug Treated-Peripheral Blood Mononuclear Cell (PBMC) Lysate for mRNA Sequencing

Jacqueline Leidner^1,2, Heidi Theis³, Michael Kraut³, Alice Ragogna¹, Marc Beyer^1,3,4, Joachim Schultze^1,2,3, Jonas Schulte-Schrepping^1,2, Caterina Carraro^1,2, Lorenzo Bonaguro^1,2

¹Systems Medicine,German Center for Neurodegenerative Diseases (DZNE) eV., ²Genomics & Immunoregulation, LIMES Institute,University of Bonn, ³PRECISE Platform for Single Cell Genomics and Epigenomics,DZNE and University of Bonn, ⁴Immunogenomics & Neurodegeneration,German Center for Neurodegenerative Diseases (DZNE) eV.

Journal (Biology)

mRNA Sequencing to Understand the Cellular Effect of Drug Treatment

Jacqueline Leidner^1,2, Heidi Theis³, Michael Kraut³, Alice Ragogna¹, Marc Beyer^1,3,4, Joachim Schultze^1,2,3, Jonas Schulte-Schrepping^1,2, Caterina Carraro^1,2, Lorenzo Bonaguro^1,2

¹Systems Medicine,German Center for Neurodegenerative Diseases (DZNE) eV., ²Genomics & Immunoregulation, LIMES Institute,University of Bonn, ³PRECISE Platform for Single Cell Genomics and Epigenomics,DZNE and University of Bonn, ⁴Immunogenomics & Neurodegeneration,German Center for Neurodegenerative Diseases (DZNE) eV.

Journal (Biology)

Surgical Procedure for Explantation of Round Window Membrane from Guinea Pig Temporal Bones

Sarek A. Shen¹, Mukund Madhav Goyal², Kelly Lane¹, Mohamed Lehar¹, Daniel Q. Sun^1,3

¹Department of Otolaryngology-Head & Neck Surgery,Johns Hopkins School of Medicine, ²Department of Chemical and Biomolecular Engineering,Johns Hopkins Whiting School of Engineering, ³Department of Otolaryngology-Head and Neck Surgery,University of Cincinnati College of Medicine

Journal (Biology)

Guinea Pig Round Window Membrane Explantation for Ex Vivo Studies

Sarek A. Shen¹, Mukund Madhav Goyal², Kelly Lane¹, Mohamed Lehar¹, Daniel Q. Sun^1,3

¹Department of Otolaryngology-Head & Neck Surgery,Johns Hopkins School of Medicine, ²Department of Chemical and Biomolecular Engineering,Johns Hopkins Whiting School of Engineering, ³Department of Otolaryngology-Head and Neck Surgery,University of Cincinnati College of Medicine

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