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Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress
 

Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress

Article DOI: 10.3791/62566-v • 05:22 min • July 29th, 2022
July 29th, 2022 •
1,2,3, 1,2, 4, 1,2, 1,2,5
1Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Orsay, France, 2Université de Paris, CNRS, INRAE, Institute of Plant Sciences Paris Saclay (IPS2), Orsay, France, 3Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE - Le Moulon, Gif-sur-Yvette, France, 4LSTM, Univ Montpellier, INRAE, IRD, CIRAD, Institut Agro, Montpellier, France, 5Universitté Paris-Saclay, AgroParisTech, INRAE, UMR MIA-Paris, Paris, France

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DiCoExpress is a script-based tool implemented in R to perform an RNA-Seq analysis from quality control to co-expression. DiCoExpress handles complete and unbalanced design up to 2 biological factors. This video tutorial guides the user through the different features of DiCoExpress.

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DiCoExpress Multifactorial RNA-Seq Experiments Quality Control Co-expression Analysis Differential Analysis Generalized Linear Model Enrichment Analysis Differentially Expressed Genes Co-expressed Gene Clusters Non-specialist User Statistical Knowledge Graphical Outputs Publication-ready Results Organism Flexibility Membrane Design Replicates Beginner's Knowledge In R Function Usage Required Arguments Optional Arguments File Manipulation
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