In this article we describe the full experimental procedure to reconstruct, with high resolution, the fine brain anatomy of fluorescently labeled mouse brains. The described protocol includes sample preparation and clearing, specimen mounting for imaging, data post-processing and multi-scale visualization.
Silvestri, L., Bria, A., Costantini, I., Sacconi, L., Peng, H., Iannello, G., Pavone, F. S. Micron-scale Resolution Optical Tomography of Entire Mouse Brains with Confocal Light Sheet Microscopy. J. Vis. Exp. (80), e50696, doi:10.3791/50696 (2013).