Fluorescent-core microcavity sensors employ a high-index quantum-dot coating in the channel of silica microcapillaries. Changes in the refractive index of fluids pumped into the capillary channel cause shifts in the microcavity fluorescence spectrum that can be used to analyze the channel medium.
This paper discusses fluorescent core microcavity-based sensors that can operate in a microfluidic analysis setup. These structures are based on the formation of a fluorescent quantum-dot (QD) coating on the channel surface of a conventional microcapillary. Silicon QDs are especially attractive for this application, owing in part to their negligible toxicity compared to the II-VI and II-VI compound QDs, which are legislatively controlled substances in many countries. While the ensemble emission spectrum is broad and featureless, an Si-QD film on the channel wall of a capillary features a set of sharp, narrow peaks in the fluorescence spectrum, corresponding to the electromagnetic resonances for light trapped within the film. The peak wavelength of these resonances is sensitive to the external medium, thus permitting the device to function as a refractometric sensor in which the QDs never come into physical contact with the analyte. The experimental methods associated with the fabrication of the fluorescent-core microcapillaries are discussed in detail, as well as the analysis methods. Finally, a comparison is made between these structures and the more widely investigated liquid-core optical ring resonators, in terms of microfluidic sensing capabilities.
Chemical sensing systems that require only small sample volumes and that can be incorporated into hand-held or field-operable devices could lead to the development of a wide range of new technologies. Such technologies could include field diagnostics for diseases and pathogens,1 environmental contaminants,2 and food safety.3 Several technologies are being actively explored for microfluidic chemical sensors, with devices based on the physics of surface plasmon resonances (SPR) among the most advanced.4 These sensors are now capable of detecting many specific biomolecules and have achieved commercial success, although mainly as larger-scale lab equipment.5
In recent years, optical microcavities have risen to compete with SPR-based systems. Microcavities can be amazingly sensitive, with demonstrated ability to detect single viruses6 and perhaps even single biomolecules7 (the latter remains the subject of some debate,8 however there is no doubt that the mass detection limits are small9 ). In microcavities, the detection mechanism relies upon changes in the optical resonances caused by the presence of an analyte within the electric field profile of the resonance. Typically, a given analyte will cause the resonance to change in in central frequency, visibility, or linewidth. As with SPR systems, microcavities can act as non-specific refractometric sensors, or as biosensors functionalized for a specific analysis.
Dielectric microstructures with a circular cross section (e.g. microspheres, disks, or cylinders) are characterized by electromagnetic resonances known as the whispering gallery modes, or WGMs, a term dating back to Lord Rayleigh’s investigations of analogous acoustic effects.10 Essentially, an optical WGM occurs when a wave circumnavigates the circular cross section by total internal reflection, and returns to its starting point in phase. An example of an electromagnetic resonance for a silica microsphere is illustrated in Figure 1a. This resonance is characterized by one maximum in the radial direction (n = 1), while a total of 53 wavelengths fit around the equator (l = 53), only some of which are shown. The evanescent part of the field intensity extends into the medium outside the sphere boundary; thus the microsphere WGM can sense the external medium.
Capillaries are an especially interesting example of a WGM-based sensor. In a capillary, cylindrical WGMs can form around the circular cross section, similar to the case for a sphere. If the capillary wall is very thin, part of the electromagnetic field extends into the capillary channel (Figure 1b). Thus, a capillary can be a microfluidic sensor for analytes injected into the channel. This is the basis of operation of the liquid core optical ring resonator (LCORR).11 LCORRs rely on the evanescent coupling of light from a precision tuneable laser source to probe the WGMs. An important aspect of the LCORR is that the capillary walls must be thin (~1 μm) to ensure that the mode samples the channel medium. This places some difficulties on their fabrication and causes them to be mechanically fragile.
In our work, we have developed an alternative structure we call a fluorescent core microcavity (FCM).12,13 To form an FCM, we coat the channel walls of a capillary with a high-refractive-index fluorophore (specifically, a layer of oxide-embedded silicon quantum dots). The high index of the film is required to confine the emitted radiation, thereby building up the WGMs (Figure 1c). In contrast to the LCORR, in an FCM the modes appear as sharp maxima in an emitted fluorescence spectrum. The thickness of the film is critically important; if it is too thick the WGM does not sample the medium in the capillary channel, and if it is too thin the optical confinement is lost and the WGMs become weak. Thus, the fabrication of an FCM is a difficult process, requiring careful preparation. This is the main topic of the current paper.
1. Preparation of Materials
2. Fabrication of Coated Capillaries
3. Characterization
4. Data Analysis
Repeat Steps 1-7 for every analysis. While this procedure sounds complicated, after the initial implementation the procedure is simple to automate, so that large data sets can be batch processed to find the shifts. We use a Mathematica code written specifically for this procedure, so that complete data sets can be batch processed “with the press of a button”. In principle, the spectral shifts can even calculated “live”, although we have not done this yet.
Small deviations in the capillary fabrication procedure can lead to significant changes in the sample success rate. In Figure 5(a-d), we show representative examples of failed capillaries as well as a successful one. Generally, the visual indication of a successful sample is a red fluorescence combined with a high intensity at the capillary walls and a featureless interior. The fluorescence spectrum also clearly indicates the difference between success and failure (Figure 5e). A good sample should show well-defined (visibility ≈ 0.5) WGM oscillations in the spectrum.
The setup can be programmed to take spectra continuously as analytes are pumped into the capillary channel (Figure 6a). Using the technique described above, the data analysis can be performed as a batch job on all the WGM spectra, which should shift as different analytes are injected into the capillary. Here, we show the results for a continuous time series (i.e. a sensorgram) as water, methanol, and finally ethanol are pumped sequentially into the channel. Only the main Fourier component was chosen in this case (Figure 6b), since the results were considered satisfactory even for this simple analysis. The error bars represent one standard deviation of the peak position for the first 100 measurements (with water in the channel).
Sensorgram operation of these devices (i.e. continuous time series as opposed to single static measurements) avoids missing potentially interesting features of an analysis. For example, we see a “bump” in the WGM shift data between water and methanol, indicating analyte with a higher refractive index than either pure component. In fact, water-methanol mixtures are known to have a higher refractive index than either pure phase,19 suggesting the presence of a small mixing region between the two solutions. For biosensing measurements, we anticipate that sensorgram measurements will be crucial for determining the nature and specificity of the analyte binding. In Figure 6c, we also see that the uncertainty in the peak position is ~10 pm, which is considerably smaller than the 110 pm pitch of the spectrometer. This improvement is achievable because of the data analysis method, which here can detect shifts an order of magnitude smaller than the spectrometer pitch.
Finally, the average sensitivity of the capillary can be obtained from the net shift for the three solutions, over the corresponding analyte refractive index range. This will depend mainly on the film thickness and refractive index. The latter is known to be ~1.67, from ellipsometric measurements on flat films prepared using similar methods.20 For a 30-μm inner diameter, the theoretical maximum sensitivity can be calculated using the perturbation theory approach developed in Ref.21, using the cylindrical solutions instead of the spherical ones. With this method, for channel index of 1.33, the maximum sensitivity of the (n, l) = (1, 190) mode near λ = 780 nm is equal to 25.7 nm/RIU for a film thickness of 265 nm. The experimental average sensitivity is 16.0 nm/RIU in this wavelength range, indicating that the film thickness is sub-optimal.
Figure 1. Electric field amplitude for the whispering gallery modes of a microsphere (a), an LCORR (b), and an FCM (c). In the latter two cases the analyte is inside the channel; for a microsphere, the analyte is outside and therefore needs a separate chamber. The radial mode order is 1, while the angular order is 53, 52, and 65, respectively.
Figure 2. (a) A capillary being dipped into a solution of FOx-15. Although it is not possible to see the meniscus in the photograph, the experimenter can observe it rising up the channel. (b) A set of final capillaries on the microscope stage for preliminary analysis. A 445-nm laser is incident near the center of the leftmost capillary; the red glow is the Si-QD fluorescence. This appears especially intense at the end of the capillary, due to waveguiding within the glass capillary walls. (c) A successful capillary held in the microfluidic analysis setup. Fluid injected into the capillary from the micropump (not shown) flows right-to-left through the channel, and enters another tube for disposal.
Figure 3. A typical WGM spectrum. The top fluorescence image shows the position of the spectrometer entrance slit, along with the corresponding 2D spectral image. The final 1D spectrum extracted is from the boxed region.
Figure 4. A single mode extracted from a capillary WGM spectrum and fit with a pure Lorentzian (Eq. 1; red line) and a skewed Lorentzian (Eq. 2; blue line). While the latter obviously provides a better fit, peak fitting is generally not the best option for identifying very small spectral shifts, as required to achieve low detection limits.
Figure 5. (a-d) show a set of fluorescence images of failed and a successful FCM. (a): no luminescence; this capillary did not properly fill or the solution was entirely evaporated. (b) yellow-orange fluorescence in the capillary channel. Here, the fluorescent region is not on the walls of the capillary but rather in the center. In some samples, the film appears to shrivel up in the middle of the channel. (c) shows strong red fluorescence but lacks WGMs in the spectrum. Some irregularities are observable in the film structure. (d) was a successful capillary with good WGMs. One signature of successful films is channel uniformity and a lack of irregular features. The corresponding fluorescence spectra are shown in (e).
Figure 6. (a) a set of spectra taken as methanol, then water, then ethanol were pumped into the capillary. The spectra were taken sequentially from red to blue. (b) shows the Fourier power spectrum of each fluorescence spectrum. The 40th component represents the main observable WGM oscillation. The corresponding phase differences were taken for this component only, and are plotted in (c), after conversion into wavelength shifts via Eq. 4. The error bars represent one standard deviation of the peak shift for 60 measurements. The inset shows the average sensitivity over the refractive index range from methanol to ethanol. Theoretically, the wavelength shifts increase with increasing refractive index and are not therefore strictly linear, in agreement with the observed shift data.
Fluorescent-core microcavities can be used as refractometric sensors. While there are isolated examples of “rolled up” microtubes that could act as microfluidic sensors,22 compared to microtubes, capillaries will be easier to integrate into microfluidic setups and have considerable practical advantages, since they are easily handled and simple to interface with an analysis setup. Using conventional Fourier analysis methods, wavelength shifts that are at least an order of magnitude smaller than the pitch of the spectroscopy system can be detected. This method also permits integration into sensorgram-type measurement systems.
These FCMs would mainly compete with liquid-core optical ring resonators (LCORRs).23,24,25 LCORRS are glass capillaries that have been thinned by heating and pulling, pumping HF into the channel to dissolve the inner capillary surface, or heating and inflation with pressurized gas.26 These treatments result in a capillary with micrometer-thin walls, as required to support WGMs having an evanescent tail extending into the capillary channel. LCORR biosensors have been demonstrated for the detection of a variety of different target analytes.27,28,29,30
FCMs have several clear advantages and limitations in comparison with LCORRs. Both devices rely on the flow of an analyte through a capillary channel. Both are based on silica chemistry and can be functionalized using similar methods. However the resolution and detection limit of the LCORR will be better, assuming equivalent data analysis methods are used. This is because LCORRs are based on precision tunable laser measurements that have a very high sampling rate, whereas FCMs use a conventional spectrometer. This decreases the detection limits (and potentially the sensitivity31) of the FCM. We have so far achieved, at best, a detection limit of around 10-5 RIU using variations of this technique, whereas a value of 10-6 RIU is standard in LCORRs. One additional issue concerns the use of a spectrometer in the overall system cost. The fluorescence from Si-QDs can easily be measured with small-footprint, non-cooled hand-held spectrometer devices such as the Ocean Optics USB2000 series (currently an expense of ~$2,000). However, use of such a device with FCMs will require consideration and testing of the experimental setup, since it may not be simple to obtain WGM spectra from a small region of the capillary without using a microscope objective and an imaging spectrometer.
LCORRs require the use of apparatus that is both expensive and difficult to operate “in the field”, such as a tunable laser and precise nanopositioning equipment. Furthermore, the thin-walled capillary is both fragile and difficult to handle. FCMs, in contrast, need a blue light source such as a simple diode laser or LED, and optics to project the fluorescence image onto the entrance slit of a spectrometer. The FCM is also much more robust than the thin-walled LCORR. The method could also be extended to different types of fluorescent layers that could have higher efficiencies and different peak wavelengths, as compared to Si-QDs. Thus, the choice of a preferred sensor (LCORR vs. FCM) would probably depend on the intended application. If very low concentrations of analyte are present, the low detection limits of the LCORR would be advantageous. If ease of use, durability, and experimental cost is the main concern, then the FCM could be a better option if the spectrometer can be integrated without the use of a fluorescence microscope. Although having distinctly different advantages and limitations, both devices are promising for microfluidic analysis of a wide range of potential analytes.
The authors have nothing to disclose.
This research was funded by NSERC, Canada.
Table of Materials | Company | Catalog # | Comments |
silica microcapillaries | |||
flexible microbore tubing | polyethylene, tygon, etc | ||
adhesive | Mascot, Norland NOA | ||
HSQ dissolved in MIBK | e.g., FOx-15 | ||
methanol | |||
ethanol | |||
distilled water |
Table 1. List of materials used.