Zebrafish keratocytes migrate in cell sheets from explants and provide an in vitro model for the study of the mechanisms of collective cell migration in the context of epithelial wound healing. These protocols detail an effective way to establish primary explant cultures for use in collective cell migration assays.
Due to their unique motile properties, fish keratocytes dissociated from explant cultures have long been used to study the mechanisms of single cell migration. However, when explants are established, these cells also move collectively, maintaining many of the features which make individual keratocytes an attractive model to study migration: rapid rates of motility, extensive actin-rich lamellae with a perpendicular actin cable, and relatively constant speed and direction of migration. In early explants, the rapid interconversion of cells migrating individually with those migrating collectively allows the study of the role of cell-cell adhesions in determining the mode of migration, and emphasizes the molecular links between the two modes of migration. Cells in later explants lose their ability to migrate rapidly and collectively as an epithelial to mesenchymal transition occurs and genes associated with wound healing and inflammation are differentially expressed. Thus, keratocyte explants can serve as an in vitro model for the reepithelialization that occurs during cutaneous wound healing and can represent a unique system to study mechanisms of collective cell migration in the context of a defined program of gene expression changes. A variety of mutant and transgenic zebrafish lines are available, which allows explants to be established from fish with different genetic backgrounds. This allows the role of different proteins within these processes to be uniquely addressed. The protocols outlined here describe an easy and effective method for establishing these explant cultures for use in a variety of assays related to collective cell migration.
Studies of cell motility have traditionally focused on individually migrating cells. Keratocytes cultured from fish and amphibian explants have proven to be a powerful model system to study the mechanisms of cell motility using both experimental and mathematical modeling approaches1-6. Experimental work on individually migrating cells is aided by the rapid, smooth gliding motion of the cells, while maintaining a uniform shape, speed, and direction. However, in vivo, cells frequently move collectively while maintaining cell-cell junctions, particularly during embryogenesis, wound healing, and metastasis. Thus, collective cell migration is a growing and increasingly prominent area of research within the field of cell migration. The collective migration of these cells has recently been described7 and it has many unique features which make it a powerful system to study collective cell migration in a wound healing model.
When scales are plucked from an anesthetized adult zebrafish, some epithelial tissue remains attached to the underside of the scale. When cell culture medium is added, these epithelial cells, or keratocytes, migrate rapidly as a collective unit from the scale. The explant culture can be viewed as an epithelial wound healing model, in which the cells migrate away from the explant as they would across the provisional matrix of a wound bed to reestablish an intact epithelium. Recent data suggests that this ex vivo culture mimics many features of in vivo wound healing in adult zebrafish. Wound closure rates8 translate to a migration speed similar to that observed in the ex vivo system7. In addition, in an in vivo wound healing model, treatment with warfarin suggests that hemostasis has no effect on rate of healing, while treatment with hydrocortisone to decrease immune response does not delay reepithelialization8. As the zebrafish does not bleed when the scale is removed from the animal, hemostasis is not a major player. Although we have found immune cells in explants, we have not studied the effects they might have on collective cell migration.
The protocol presented here describes how to establish zebrafish keratocyte explant cultures that ensure consistency and reproducibility for use in many biological assays. These explant cultures are a particularly compelling in vitro model for collective cell migration for several reasons. First, zebrafish keratocytes are primary cells used within hours of establishing explant cultures. Therefore, these cells have not undergone the morphological and gene expression changes associated with passage of primary cells9-13. Second, this system represents a model for the study of reepithelialization in response to wounding14 and, as part of the response to wounding, an epithelial to mesenchymal transition (EMT) process is initiated as evidenced by changes in gene expression and cytoskeletal rearrangements14,15. Thus, the background changes in gene expression and motility which occur in untreated cells have been characterized and provide a context to interpret changes with treatment. Furthermore, the fish keratocyte and the human keratinocyte are functionally equivalent; both are the primary epithelial cells of their respective species and play a key role in epithelial wound healing. Third, adult zebrafish are gaining recognition as a model system for a variety of human diseases16-18 including melanoma and other cancers19-21, cutaneous wound healing8,14 and tissue regeneration22-24.
Technical advantages of this model system are equally compelling. A growing number of mutant and transgenic lines are available from non-profit, centralized facilities. Specifically, the Zebrafish Mutation Project (ZMP) at the Wellcome Trust Sanger Institute aims to create a knockout allele in every protein coding gene in the zebrafish genome. Currently, they have mutated 11,892 genes, approximately 45% of the genome, with 24,088 alleles characterized. In addition, ZMP accepts proposals and will generate knock-outs free of charge. Recent methods in gene knockdown in larval and adult zebrafish25-28 provide flexibility to study the function of developmentally important genes for which transgenic approaches are problematic or impractical.
Due to their extremely rapid rates of motility of ~145 µm/hr shortly after establishment of cultures29, assays can be completed rapidly (usually in 24 hr or less). As experiments can be completed rapidly and cultures grow well at RT, several of the technical hurdles associated with mammalian cell migration assays involving video microscopy are avoided. In addition, in the age of tightening research budgets, zebrafish are easily and inexpensively maintained.
The structure and behavior of the explant is complex. As the fish do not bleed when the scale is removed, it is unlikely that much more than the superficial epidermal layers are removed with the scale. Keratocytes appear to be the predominant cell type in the explant when scales are initially removed from the fish as the vast majority of cells appear to stain with an anti-E-cadherin antibody14. Furthermore, there is no evidence of fibroblasts in the initial culture as judged by the absence of vimentin staining by immunofluorescence14. However, with repeated scale removal, there appear to be numerous neutrophils in the explant (see Video 1). We have identified these cells as neutrophils based on morphological observations of their size, rapidly motility, and their migration out of the cell sheet when exposed to LPS (data not shown). Additionally, these cells stain brightly with an antibody to neutrophil cytosolic factor as well as with a variety of secondary IgG antibodies, which indicates that they have abundant FcRs on their surface (data not shown). Multiple cell layers are present within the explant. Confocal microscopy reveals the presence of a single layer near the leading edge to more than two layers of keratocytes near the scale with neutrophils visible above, below, and between the cell keratocyte sheets.
At early time points, cells on the edge of the multi-layer explant polarize, initiating collective migration of keratocytes from the explant at initial rates of ~145 µm/hr. The area covered by the explant rapidly increases, leading to cell spreading, tension within the sheet, and a decreased rate of advance of the leading edge. Rapid interconversions between leader and follower cells are observed at the leading edge during the formation and closure of spontaneously formed holes within the sheet7. As the EMT process initiated with the explant continues, the sheet fragments and the keratocytes lose their specialized, rapid motility. Gene expression and morphological changes consistent with EMT, wound healing, and inflammatory responses occur within 7 days of culture with explants being considered viable for approximately 10 days14.
This protocol conforms to the AVMA Animal Welfare Principles for the care and use of laboratory animals and has been approved by the Institutional Animal Care and Use Committee (IACUC) at Midwestern University.
1. Preparation of Anesthesia, Equipment, & Media
2. Establish Explant Cultures
3. Brightfield and Video Microscopy
4. Fixation for Immunofluorescence Microscopy
5. Immunofluorescence Protocol
As illustrated in Figure 1, sheets of keratocytes can be observed migrating out from beneath the scale within hours of establishing the explant culture. Occasionally, an individually migrating keratocyte which has broken away from the collectively migrating sheet can be observed. In addition, as the explant was established from a fish which had been previously plucked, there are abundant neutrophils migrating through the sheet. At longer culture periods, the keratocyte sheet fragments as cells undergo EMT14.
The initial rate of sheet advancement is extremely rapid but this rate quickly slows as cells spread (measured by area and internuclear distance which increase ~1.8 and ~3.1 fold respectively) during the first 48 hr of culture (Figure 2A-C). The rapid increase is not associated with cell proliferation; after labeling for 24 hr with the fluorescent thymidine analog ethynyl deoxyuridine (EdU), ~10% of cells show evidence of cell division, a rate far lower than seen in transformed cell lines but more consistent with the cells involved in reepithelization in human organotypic cultures30. At later times, the sheet fragments (a phenomenon associated with the EMT observed in this system14) which makes the advance of the leading edge difficult to measure.
The area covered by sheets after 24 hr, can be used as a rapid screen for the ability of compounds to alter collective cell migration15,31. When treatment is added at the time explants are established, a dose-response in sheet area can be seen. Some mammalian cytokines (e.g., TGF-115), chemokines (such as CXCL12) and small molecule inhibitors originally characterized in mammalian systems (e.g., MMP-2, -9,and -13 inhibitors31) have been successfully employed. However, as sheet areas at 24 hr are not normally distributed (Figure 3A), non-parametric statistical tests such as a Kruskal-Wallis ANOVA must be used to determine statistical significance. For graphical display, the median standard errors of the median (upper reference limit (URL) and lower reference limit (LRL)) are plotted as these accurately describe the variation in the data. The URL and LRL are the data points (where n = number of observations) above and below the median in a rank order list of the data. When using custom error bars in Microsoft Excel, the difference between the median and each reference limit must be used (UEB and LEB in Figure 3C).
In many cases, effects of treatment(s) on collective migration are observed in shorter periods of time. In these cases, video microscopy can be used to assay response of the collectively migrating sheet to treatment. When soluble RGD containing peptide is added to the culture medium (third panel in Figure 4) to disrupt adhesion formation, the lamellae at the leading edge of the sheet rapidly shrink and subsequently the leading edge of the sheet detaches and retracts. As the entire sheet retracts in less than 2 min, response of the sheet to treatment can be rapid.
To assess localization of proteins within the sheet or within leader and follower cells, the entire sheet can be fixed and stained, as shown in Figure 5. Care must be taken during the fixation process as the cell sheets are easily disrupted. In our hands, many polyclonal antibodies to the functional domains of mammalian proteins (particularly of cytosolic proteins) have been found to cross react in our zebrafish explants.
Figure 1. Collective migration of cell sheets. After establishment in explant culture, keratocytes migrate out from underneath the scale as a collective unit. (A) illustrates the relative amount of cells that have migrated away from the scale after only 2 hr in culture, with (B-E) taken each hour thereafter (3 – 6 hr, respectively). All images were taken at 100X magnification. The entire sequence is shown in Video 1; one frame was taken every 30 sec over the 6 hr time period. Please click here to view a larger version of this figure.
Figure 2. Characteristics of Collective Migration. Initial rate of advance of the leading edge, measured at several points, is rapid but slows down during the first 24 hr in culture (A). Measurement of internuclear distance and cell area using cultures fixed at 4 and 24 hr and stained with DAPI and phalloidin as reference indicate that during the same time period, both the internuclear distance (measured from the center of each nucleus) and the cell area increases (measured as area enclosed by the cortical actin cytoskeleton, (B) and (C) respectively). Each graph represents the mean (± SEM) of three independent experiments in triplicate. This figure has been modified from Rapanan et al.7 Please click here to view a larger version of this figure.
Figure 3. Assay of Collective Migration using Cell Sheet Area. When added to the culture medium during establishment of the culture, peptide Z-PLG-NHOH (broad spectrum MMP) and small molecule SB-3CT (MMP2 & 9 specific) inhibitors decrease cell sheet area after 24 hr in culture (A). As the area of untreated cell sheets is exponentially distributed (B), data should be plotted as medians with standard error of the median determined as described in the text and indicated in blue (upper reference limit or URL and lower reference limit or LRL; (C)). The difference between the median and the URL and LRL determine the size of the error bars on the graph (shaded in light green). This figure has been modified from McDonald et al.31 Please click here to view a larger version of this figure.
Figure 4. Addition of Soluble RGD Peptide Leads to Sheet Retraction. During pretreatment and after addition of an RGE-containing peptide, the cell sheet continues to advance. 15 sec after addition of an RGD-containing peptide, there is a decrease in the lamellae at the leading edge (inserts). After an additional 30 sec, the sheet begins to retract, a retraction which continues during the duration of the video (total video length ~5 min, see Video 2). Please click here to view a larger version of this figure.
Figure 5. Immunofluorescence Assay. Cells were stained with an antibody to the catalytic domain of MMP14a (red) and counterstained with fluorescently-labeled (488) phalloidin (green) and/or DAPI (blue). (A) and (B) represent a typical 4 hr sheet emerging from the scale while (C) and (D) show a portion of a typical 24 hr sheet. All images were taken at 400X magnification. Note that the intensity of MMP14a staining is higher at the leading edge of the emerging cell sheets (seen in (B) and (D)) and prominent lamellipodia are seen in the leader cells (A) and (C)). Please click here to view a larger version of this figure.
The most critical step for success of keratocyte explant culture is allowing the scale to adhere to the culture dish for approximately 2 – 3 min before addition of the culture medium. Approximately 75% of scales will adhere and grow sheets (the number of cultures established for each experiment will need to be adjusted accordingly). Keratocyte sheets do not form around every scale removed from the fish and placed in culture for several reasons. First, DAPI staining of explants reveals that some scales have few cells attached and thus it is expected that these scales will not have sheets of keratocytes. Second, the ability of explants to adhere to the tissue culture dish is an essential prerequisite for sheet migration. A key determinant of whether scales adhere and a successful explant culture is established is the time between placing the scale on the growth surface and the addition of media. Insufficient time to adhere without media will lead to scales floating in media (sometimes with visible tissue attached) while too long a period will result in adherent scales with no growth (presumably due to drying out of the explant with cell remnants visible at the edge of the sale). The time between scale placement in the dish and the addition of growth medium may need to be determined experimentally, as factors such as temperature and humidity within the lab room may influence how fast cells can adhere to the dish without drying out.
Although the number of commercially available, zebrafish specific antibodies is increasing, the variety of available reagents can be limiting. An 85% homology between immunogen and target protein is typically deemed necessary for cross-reactivity. However, as functional domains such as active sites, protein-protein interaction sites, and sites of modification are more conserved than other regions of the protein, anti-peptide polyclonal antibodies directed to these regions can frequently be used even if overall homology is low. For example, although zebrafish MMP14a has an overall 68% identity with its human ortholog (expect value = 0), the fraction of identity increases to 79 – 96% in catalytic and protein binding sites while cut sites are similarly highly conserved31. The data suggest that an antibody directed to the catalytically active site of human MMP14a cross-reacts with zebrafish keratocytes cultures. The suggestion that the staining in zebrafish sheets may localize to the stretched cells at the leading edge31 is consistent with other data suggesting that MMP14 may serve as a mechanical sensor32.
It is not possible to create an entirely sterile explant from a fish swimming in unsterile aquaria water. As most of our experiments are completed within 24 hr, we experience no issues with bacterial or fungal contamination of explants. However, when longer incubation periods are desired, maintaining sterility of explants may become an issue. When planning an experiment involving 3 or more days of incubation, several precautions are taken to increase the likelihood that the cultures remain uncontaminated. First, to reduce the bacterial load, the fish is allowed to swim for about 1 hr in 3 changes of fresh, dechlorinated tap water with or without the addition of 100 µg/ml kanamycin. Second, the media is exchanged on a daily basis to maintain adequate levels of antibiotic and reduce the number of any bacteria present. For particularly long incubations (>5 days) three washes with 1x PBS are performed with each media exchange. However, this introduces a variable which must be considered in the experimental design when the explant culture is treated with an exogenous compound as this will need to be replaced with the media. In addition, cytokines and growth factors secreted by the explant will be removed with each media exchange. However, as the cell number is low and the volume of media is large in a typical keratocyte explant, this effect may not be substantial.
As fish scales require 3 weeks to fully regenerate33, we recommend allowing the fish to recover for this period of time before repeated use of the fish in experiments. Although reforming the epithelial layer occurs much more rapidly, we presume that waiting this length of time between using the same fish minimizes the chance for systemic inflammatory effects which have been reported in cutaneous wound healing in fish34.
Explants have long been used to study the behavior of epithelial cells. Explants from a wide-variety of fish species and amphibians have similar motile properties at the individual and collective cell migration levels3-6,35-37. These cells have distinctly different motile properties than mammalian explants but the overall structure and organization appear to have a high degree of similarity8,30,38 although the molecular processes of EMT and wound healing appear to be well conserved14.
We have found that this protocol allows us to study the collective migration of zebrafish keratocytes using primary cell explants that model the early stages of wound healing14. Conducting experiments using newly established primary cultures avoids issues associated with serial passage of primary cells or the use of transformed cell lines. Explants may be used to study the role of EMT in cutaneous wound healing as EMT is initiated when cultures are established. Our studies suggest that these primary explants more accurately mimic the natural behavior and migration of keratocytes within the wounded epithelial layer in vivo. This protocol provides the foundation for establishing primary cultures for use in migration assays as well as for examining changes in gene and/or protein expression in a seemingly endless array of experimental conditions. The procedures are quick, easy, inexpensive, reproducible, and suitable for use at any research institution.
In summary, this explant technique provides a rapid assay for collective cell migration in the context of a wound healing model which is undergoing EMT. The presence of several cell types in multiple layers with an orienting scale provides complexity to this ex vivo culture system.
The authors have nothing to disclose.
This work was supported by funds from Midwestern University College of Health Sciences Research Facilitation Grant awarded to EEH and Midwestern University Office of Research and Sponsored Programs Intramural Grant awarded to KJL.
Name of Material/ Equipment | Company | Catalog Number | Comments/Description |
35 mm Glass Bottom Culture Dishes (Poly-D Lysine Coated) | MatTek | P35GC-1.5-14-C | 1.5 mm thickness is best for coverslip removal. 14 mm diameter provides more culture area. |
Swiss Jewelers Style Forceps, Integra, Miltex 17-303 | VWR | 21909-460 | We find that narrow, fine forceps work the best for scale removal. |