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IR-TEx: An Open Source Data Integration Tool for Big Data Transcriptomics Designed for the Malaria Vector Anopheles gambiae
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Biology
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JoVE Journal Biology
IR-TEx: An Open Source Data Integration Tool for Big Data Transcriptomics Designed for the Malaria Vector Anopheles gambiae

IR-TEx: An Open Source Data Integration Tool for Big Data Transcriptomics Designed for the Malaria Vector Anopheles gambiae

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5,816 Views

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08:22 min

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January 15, 2020

DOI:

10.3791/60721-v

DOI:
10.3791/60721-v

•

08:22 min
January 15, 2020

•

4 Views
, , , ,
1Vector Biology,Liverpool School of Tropical Medicine, 2Research Computing Unit,Liverpool School of Tropical Medicine, 3Department of Immunology and Infectious Diseases,Harvard T.H. Chan School of Public Health

Summary

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IR-TEx explores insecticide resistance-related transcriptional profiles in the species Anopheles gambiae. Provided here are full instructions for using the application, modifications for exploring multiple transcriptomic datasets, and using the framework to build an interactive database for collections of transcriptomic data from any organism, generated in any platform.

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Ingham, V. A., Bennett, A., Peng, D., Wagstaff, S. C., Ranson, H. IR-TEx: An Open Source Data Integration Tool for Big Data Transcriptomics Designed for the Malaria Vector Anopheles gambiae. J. Vis. Exp. (155), e60721, doi:10.3791/60721 (2020).

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