This article provides detailed protocols for inflicting Penetrating Traumatic Brain Injury (PTBI) to adult Drosophila and examining the resulting neurogenesis.
The molecular and cellular mechanisms underlying neurogenesis in response to disease or injury are not well understood. However, understanding these mechanisms is crucial for developing neural regenerative therapies. Drosophila melanogaster is a leading model for studies of neural development but historically has not been exploited to investigate adult brain regeneration. This is primarily because the adult brain exhibits very low mitotic activity. Nonetheless, penetrating traumatic brain injury (PTBI) to the adult Drosophila central brain triggers the generation of new neurons and new glia. The powerful genetic tools available in Drosophila combined with the simple but rigorous injury protocol described here now make adult Drosophila brain a robust model for neural regeneration research. Provided here are detailed instructions for (1) penetrating injuries to the adult central brain and (2) dissection, immunohistochemistry, and imaging post-injury. These protocols yield highly reproducible results and will facilitate additional studies to dissect mechanisms underlying neural regeneration.
Damage to the brain and nervous system is a major cause of death and disability worldwide. Approximately 1.5 million Americans suffer traumatic brain injuries (TBI) every year1, while an estimated 6 million individuals in the United States alone suffer from neurodegenerative diseases, such as Parkinson's and Alzheimer's Disease2. Both disease and injury to the brain can cause neural degeneration, leading to sensory, cognitive, and motor defects3. Developing therapeutic strategies for human brain repair has been difficult due to the complex physiology of the brain. Model organisms such as Drosophila melanogaster provide a simple system for identifying the fundamental mechanisms underlying neurodegeneration and potential therapeutic targets4.
The fruit fly Drosophila melanogaster has been a powerful model organism for more than a century, advancing the fields of genetics, developmental biology, and neuroscience5,6. The Drosophila brain comprises only ~90,000 neurons7, a million-fold fewer than the average human brain8, yet they have many similarities. Both human and fly brains utilize the neurotransmitters GABA, glutamate, acetylcholine, and the biogenic amines dopamine and serotonin9. Drosophila and human neurons also function similarly, with a shared synaptic architecture and analogous neural cell types10. The smaller brain size of Drosophila and the availability of advanced genetics techniques, in combination with the conservation of molecular, cellular, and physiological mechanisms between Drosophila and mammals, permits Drosophila researchers to ask questions that are impractical or difficult to answer in mammalian models.
Our current understanding of adult neurogenesis in Drosophila, both during homeostasis and following injury, remains limited. More is known about neurogenesis during normal development. For example, neurons and glia are created during development from precursor cells, called neuroblasts10,11. At least three different types of neuroblasts have been distinguished in the central brain. Both Type I and Type II lineage neuroblasts exit the cell cycle ~20-30 h after puparium formation12. In contrast, the mushroom body neuroblasts are the last to terminate cell division and do so via Reaper-dependent apoptosis ~85-90 h after puparium formation13. Following eclosion, the adult Drosophila brain has few dividing cells (~1 cell/brain), predominantly glia14. The adult optic lobes possess slowly cycling neuroblasts capable of neurogenesis15, while the adult central brain has no known neuroblasts. The scarcity of neural progenitors and limited cell proliferation strongly resembles the situation in the adult mammalian brain, underscoring the potential relevance of the mechanisms of adult neurogenesis in Drosophila to humans.
The discovery of low levels of adult neurogenesis in the adult Drosophila optic lobes after injury15 led to the hypothesis that the adult Drosophila central brain also might be capable of adult neurogenesis16. This protocol describes creating a rigorous, reproducible model of central brain injury in adult Drosophila that can be used to investigate neurogenesis in the adult central brain. Given the similarities between human and Drosophila brain architecture and function, these discoveries could lead to the identification of critical targets for therapeutic neurogenesis in injured and diseased human brains.
This protocol follows the animal care guidelines of UW-Madison.
1. Generating adult Drosophila for PTBI
2. Penetrating traumatic brain injury (PTBI; Figure 1)
3. EdU labeling
4. Dissection, immunohistochemistry, and mounting
5. Confocal imaging
NOTE: Image brains using a laser-scanning confocal microscope with excitation lasers and emission filter cubes appropriate to DAPI and the fluorescent secondary antibodies (i.e., 405 nm, 488 nm, and 568 nm, 633 nm, respectively).
6. Data analysis
PTBI stimulates cell proliferation
To determine the extent of neurogenesis after a central brain PTBI, the proliferative response was measured in young adult males collected and injured within 6 h of eclosion. A significant increase in proliferation was observed 24 h post-injury using anti-phosphohistone 3 (PH3), a marker for cells actively undergoing mitosis. Approximately 3 PH3+ cells in control central brains and 11 PH3+ cells in the injured central brains are observed 24 h post-PTBI (Figure 2A-D). The majority of the dividing cells are located near the injury site. A second assay for cell division was used to quantify the cumulative cell proliferation from a single injury and to assess the extent to which the newly created cells survived. 5-ethynyl-2'-deoxyuridine (EdU) is a thymidine analog that can be incorporated into newly synthesized DNA and permanently label cells that have undergone DNA synthesis. Flies were given a 4-day pulse of EdU, followed by a 3-day chase. This revealed that the labeled cells were viable and survived at least 3 days after proliferation. By 7 days, there were an average of 2 EdU+ cells in control central brains and an average of 11 EdU+ cells in the injured central brains, respectively (Figure 2E). This is similar to the results obtained 24 h post-injury using the PH3 antibody. When cell proliferation is measured at 14 days, the uninjured controls averaged 1 EdU+ cell per central brain, while the injured brains averaged 29 EdU+ cells (Figure 2E), demonstrating that cell proliferation continues at least into the second week following a PTBI.
Cell proliferation is age-dependent
The greatest proliferative response in the central brain was observed within the first 24 h after eclosion (Figure 3). By 7 days post-eclosion, a penetrating injury still causes a significant increase in proliferation, with an average of 6 PH3+cells per central brain. Still, by 14 days post-eclosion, the ability for cells to divide following PTBI decreases significantly to 1 dividing cell, similar to that of control brains (Figure 3). Thus, the potential for cell proliferation post-PTBI is age-dependent.
Newly created neurons can project to correct target areas
To evaluate neural regeneration post-PTBI, the perma-twin labeling system15 was used. Perma-twin lineage tracing permanently labels dividing cells and their progeny with a green fluorescent protein (GFP) or red fluorescent protein (RFP)15. More perma-twin clones were detected in injured samples, at 2 days and 2 weeks, than in controls (Figure 4A-E). Notably, there were new mushroom body neurons in ~50% of the PTBI brains 2 weeks post-injury (Figure 4N). These new neurons projected their dendrites appropriately to the mushroom body calyx and their axons appropriately to the mushroom body lobes (Figure 4D,F,G). This indicates that the newly created cells may be functional neurons involved in the repair of the damaged mushroom bodies. Other areas of the brain that appeared to regenerate include the ellipsoid body (EB) (Figure 4H,I), the antennal lobes (AL) (Figure 4J,K), and the lateral horn (LH) (Figure 4L,M) which possessed large clones approximately 26%, 26%, and 20% of the time, respectively (Figure 4N). These results underscore the utility of this system for the investigation of adult neurogenesis. A proposed model for the sequence of events following PTBI and leading to the generation of new neurons is shown in Figure 5.
Figure 1: Penetrating Traumatic Brain Injury (PTBI) to the adult Drosophila central brain. (A) Schematic of the exterior of an adult fly head. This is a frontal view. Thus, the right side of the animal is to the viewer's left. (B) Schematic of the interior of an adult Drosophila head with the injury trajectory indicated in grey. This is a posterior view. Thus, in this image and subsequent figures, the right side of the brain is to the right. Central brain PTBI impacts multiple brain structures, including the mushroom body (green) and tissues outside the brain, including the fat body (blue) and hemocytes (red). CB = central brain region. OL= optic lobe region. (C) Dorsal view of a live adult head in which mushroom bodies (arrowheads) are labeled with a green fluorescent protein (GFP). This is the 'standard genotype' (see text for details). The PTBI protocol reproducibly results in injury to the mushroom bodies. This Figure has been adapted from Reference16. Please click here to view a larger version of this figure.
Figure 2: PTBI stimulates cell proliferation. Uninjured control (A) and PTBI (B) schematics. The blue boxes in the upper right corners indicate the brain regions shown at higher magnification in panels (C) and (D). (C,D) PH3 antibody (red) was used to assay cell proliferation 24 h after injury. In control brains (C), there are few PH3+ cells and none near the MB. However, in PTBI brains (D), there are PH3+ cells near the MB.(E) Quantification of proliferating cells. The numbers reflect proliferating cells throughout entire brains, not only in the vicinity of the mushroom body. At 24 h, uninjured control brains had an average of 3 PH3+ cells/brain (n = 11 brains, 28 cells), while 24 h post-PTBI, brains had an average of 11 PH3+ cells/brain (n = 17 brains, 181 cells). At 7 days, uninjured controls have few EdU+ cells, with an average of 2 EdU+ cells/brain (n = 15 brains, 24 cells), while 7-day post-PTBI brains had an average of 11 EdU+ cells/brain (n = 22 brains, 238 cells). At 14 days, uninjured controls have an average of 1 EdU+ cell/brain (n = 8 brains,11 cells), while 14-day post-PTBI brains have an average of 29 EdU+ cells/brain (n = 14 brains, 400 cells). For this set of experiments, young adult males within 6 h of eclosion were used. Unpaired t-tests of control and PTBI samples at the 3-time points yield values of p<0.0001, p<0.0001, and p<0.0002, respectively. Error bars reflect the standard deviation (SD). This Figure has been adapted from Reference16. Please click here to view a larger version of this figure.
Figure 3: The proliferative response to PTBI decreases with age. To explore whether age impacts the amount of cell proliferation that occurs post-injury, newly eclosed adult males were compared to animals aged to 7 days, 14 days, and 28 days before PTBI, using anti-PH3 to assay cell proliferation 24 h after injury. Flies injured within 6 h of eclosion had an average of 11 PH3+ cells/brain (n = 17 brains, 182 cells) compared to an average of 3 PH3+ cells/brain in age-matched controls (n = 11 brains, 28 cells). Flies aged to 7 days, then subjected to PTBI, had an average of 6 PH3+ cells/brain (n = 11 brains, 65 cells) compared to age-matched controls with an average of 2 PH3+ cells/brain (n = 5 brains, 12 cells). When flies were aged to 14 days before PTBI and assayed 24 h later, there was an average of 1 PH3+ cell/brain (n = 8 brains, 11 cells) similar to age-matched controls, which also averaged 1 PH3+ cell/brain (n = 4 brains, 2 cells). 28-day uninjured control (n = 4, 1 cell) and PTBI (n = 3, 1 cell) flies both averaged 0 PH3+cells/brain. Unpaired t-tests for PTBI to control comparisons at these 4-time points are p<0.0001, p<0.04, p<0.07, and p<0.84, respectively. This Figure has been adapted from Reference16. Please click here to view a larger version of this figure.
Figure 4: Perma-twin lineage tracing demonstrates brain regeneration and appropriate targeting of axons following PTBI. The perma-twin lineage-tracing system15 was utilized to analyze neurogenesis after PTBI. This system permanently labels dividing cells and progeny with a green fluorescent protein (GFP) or red fluorescent protein (RFP). Flies were reared at 17 °C to keep the system off during development. F1 males carrying perma-twin transgenes were collected upon eclosion, then injured and placed at 30 °C to recover for 2 or 14 days. (A) In 2-day uninjured controls, there are some GFP+ cells scattered throughout the brain. (B) At 14 days, there are relatively few GFP+ cells present in the control central brain. (C) In comparison, 2-day injured brains have more GFP+ cells that tend to cluster near the injury (arrowhead). (D) At 14 days post-injury, there are large clones near the site of injury. Some of these clones have axons that project along the mushroom body tracts (arrowhead). Only the GFP channel is shown here; there were similar RFP+ clones in the PTBI samples. (E) The number of clones increases over time post-PTBI.Control uninjured brains (n = 13) have an average of 10 clones at 2 days, while 2-day PTBI brains (n = 20) have an average of 23 clones (p<0.00002). At 7 days, control brains had an average of 9 clones per brain (n = 18), while 7-day PTBI brains had an average of 39 clones per brain (n = 16) (p-value<0.00000002). This is significantly more than the number of clones seen at 2 days post-injury (p-value<0.0009). In 14-day control brains, there is an average of 10 clones per brain, which is not significantly different from the 2-day and 7-day controls. However, at 14 days post-PTBI, there is an average of 66 GFP+ clones, which is significantly more than either age-matched controls (p<0.0000003) or 2-day post-PTBI brains (p-value<0.0001). Error bars reflect SD. (F-M) PTBI stimulates clone formation in multiple regions in the brain. Panels on the left side are schematics of brain regions where large clones were found 14 days post-PTBI (A, H, J, L). Panels on the right show high magnifications of representative brains (G, I, K, M). Many 14-day brains had clones that projected to particular target areas. These included the mushroom body (MB) (F,G), the ellipsoid body (EB) (H,I), the antennal lobe (AL) (J,K), and the lateral horn (LH) (L,M). (N) Both clone number and clone size increase with time post-PTBI.The proportions of brain regions with large clones were calculated at 2, 7, and 14 days in controls and injured brains. At 2 days, ~8% of control brains (n = 13) showed AL clones, while there were no AL clones in 2-day injured brains (n = 20). In 7-day control brains (n = 18), 6% had AL and 6% had EB clones. At 7 days post-PTBI (n = 16), 6% of brains also had AL clones, 6% had EB clones, and 19% had large MB clones. At 14 days, control brains (n = 9) did not exhibit any specific areas with clones, while 47% of PTBI brains (n = 15) had MB clones, 20% of PTBI brains had AL clones, and 27% of PTBI brains had EB clones, and 27% had LH clones. This Figure has been adapted from Reference16. Please click here to view a larger version of this figure.
Figure 5: Summary model for regeneration following penetrating traumatic brain injury (PTBI). In young adult Drosophila, there are quiescent neuroblast-like cells within the central brain that lack expression of canonical neuroblast genes. By 24 h post-PTBI, the quiescent neuroblast-like cells are activated, express neuroblast genes, and have begun to proliferate. At both 4 h and 24 h post-PTBI, there is a wave of cell death16. At 7 days, the proliferation rate is still high, and many of the new cells have adopted mature cell identities, becoming neurons or glia. At 14 days post-PTBI, large clones of new neurons with axons and dendrites correctly projecting to their respective target areas. Locomotor defects are also restored by 14 days, suggesting that adult Drosophila can regenerate functionally and structurally. This Figure has been adapted from Reference16. Please click here to view a larger version of this figure.
Although penetrating injuries to the adult Drosophila brain have been described previously15,17,18, these injuries focused on the optic lobes and not the central brain. Further, detailed instructions for how to carry out the injuries are thus far lacking. This protocol describes a model for penetrating injury to the adult Drosophila central brain that reproduces statistically significant evidence for adult neurogenesis after PTBI.
The reproducibility of this PTBI protocol is due, in part, to the mushroom body as the injury target region. The mushroom body is large, consisting of ~2200 neurons with complex dendrite and axon arbors in large and highly stereotyped arrays18. The cell bodies of mushroom body neurons lie near the brain's surface and can be visualized through the head cuticle using the expression of green fluorescent protein (GFP) (Figure 1C). Mushroom body precursors are the last neural stem cells to undergo apoptosis during development13,12,19. Thus, many mushroom body neurons are pretty young at the time of eclosion. This led to the hypothesis that the mushroom body might have more mitotic potential than other brain regions16. In addition, the mushroom body is critical for learning and memory18. This allows one to ask whether PTBI-triggered neurogenesis leads to functional recovery.
Other factors that contribute to the reproducibility of the results include using outcrossed flies of consistent genotypes, performing crosses in the same direction each time, precisely controlling the rearing and aging temperatures, and analyzing males and females separately. Using F1 flies from an outcross reduces the probability of analyzing brains homozygous for spontaneous mutations. The standard cross of y[1] w[1];UAS-mCD8-GFP;; OK107-GAL4 adult females to y[1] w[1] adult male flies results in F1 progeny of the genotype y[1] w[1];UAS-mCD8-GFP/+;; OK107-GAL4/+. OK107-GAL4 is expressed in all intrinsic neurons of the mushroom body and drives expression of the membrane-bound reporter UAS-mCD8-GFP permitting visualization of mushroom bodies and their projections. For the perma-twin crosses, crosses must remain at 17 °C at all times to keep the lineage tracing system switched off. This ensures that no dividing cells are labeled during development and that only adult-born neurons and glia are labeled. To this end, the fly room can also be maintained at 17 °C. Although the initial description of the perma-twin system15 recommended rearing flies at 18 °C, this can lead to significant background labeling.
For consistency, it also is recommended to keep the control uninjured flies on the CO2 pad as one carries out the PTBI. This ensures that both sets of flies have identical anesthetic exposure. In addition, it is desirable for reproducibility to completely penetrate the head. However, care must be taken not to bend the tip of the pin against the pad, making it unusable for future injuries. For skilled practitioners, there is little unintended harm to PTBI flies. Nonetheless, pressing too hard on the thorax to stabilize the fly during injury can be lethal. One way to assess the extent of the unintended injury is to quantify the mortality of PTBI flies 24 h post-injury. For unilaterally injured flies, this can be 50% or higher for beginners. Therefore, to ensure that observed outcomes are due to PTBI and not to unintended injury, it is advised that beginners practice administering PTBI on ~20 flies daily over several weeks and do not analyze the resulting brains until the 24 h mortality is consistently <10%.
To quantify the amount of proliferation stimulated by central brain PTBI, both anti-phosphohistone H3 (PH3) immunostaining and 5-ethynyl-2´-deoxyuridine (EdU) incorporation can be employed. Anti-PH3 labels cells before and throughout metaphase, limiting detection to only a fraction of the actively dividing cells. Thus, anti-PH3 staining provides only a partial glimpse of proliferation. EdU is a thymidine analog that can be incorporated into newly synthesized DNA. By feeding flies EdU before and after injury, it is possible to gain a more complete picture of the cells that are either dividing or have divided following the injury. The fact that any cells that divide are permanently marked is helpful both for the identification of slowly cycling cells and assay the survival of cells after initial proliferation. For unclear reasons, but maybe due to limited permeability of the blood-brain barrier, EdU labeling is inefficient and under-reports cell proliferation in the adult brain. This is evidenced by the similar numbers of PH3+ and EdU+ cells in both control and experimental brains at 24 h post-PTBI and by observing that only a subset of new cells in perma-twin clones incorporate EdU16. For maximal labeling, it is essential to pre-feed the flies with EdU because injured flies do not resume feeding for several hours post-PTBI. Feeding was assessed by adding food coloring to the EdU solution and monitoring the amount of dye in the gut through the abdominal cuticle16.
It is to be noted that while we have provided a brain dissection protocol in step 4, alternative techniques may be used. Several of these are available in previously published protocols20,21,22. Drosophila melanogaster offers a low-cost model with powerful genetic and molecular tools that can be used to study the mechanisms underlying regeneration of multiple tissues, including the gut and components of the nervous system. A novel and reproducible injury model that can be used to study the response to brain injury is outlined here. Data obtained using these protocols support the idea that the adult Drosophila central brain retains the proliferative ability, generating new neurons in response to injury. These observations warrant further investigation of both the extent of adult neurogenesis and its underlying molecular mechanisms. Once the components involved in neural regeneration are identified in this system, we can convert our knowledge of adult Drosophila neurogenesis to humans.
The authors have nothing to disclose.
We are grateful to Stacey Rimkus and Becky Katzenberger for technical assistance and to Eduardo Moreno for sharing the perma-twin stocks. We would like to thank Barry Ganetzky and David Wassarman for lively discussions that undoubtedly improved science and Kent Mok, Cayla Guerra, and Bailey Spiegelberg for their contributions to the laboratory. The FasII antibodies were developed by Corey Goodman and obtained from the Developmental Studies Hybridoma Bank, created by the NICHD of the NIH and maintained at The University of Iowa, Department of Biology, Iowa City, IA 52242. Most of the Drosophila strains used in this study were obtained from the Bloomington Drosophila Stock Center (BDSC; NIH P40OD018537). This work was supported by NIH T32 GM007133 (KLC); NIH NS090190 (GBF); NIH NS102698 (GBF); the University of Wisconsin Graduate School (GBF); and the UW-Madison Women in Science and Engineering Leadership Institute (WISELI) (GBF).
#11 disposable scalpels | Santa Cruz Biotechnology | sc-395923 | used for separating Drosophila heads from trunks prior to brain dissection |
150 mm diameter black Sylgard dishes | Dow | 1696157 | made in the laboratory with reagents from Dow; used for brain dissection |
18 mm coverslips | any | for mounting brains on microscope slides | |
4',6-Diamidino-2-Phenylindole, Dihydrochloride (DAPI) | ThermoFisher | D1306 | for immunohistochemistry |
70% Ethanol | made from 95% ethanol sourced variously | ||
anti-mouse Cy5 | Jackson ImmunoResearch | 715-175-151 | for immunohistochemistry |
anti-rabbit 568 | ThermoFisher | A11036 | for immunohistochemistry |
bovine serum albumin (BSA) | SIgma Aldrich | A7030 | for immunohistochemisty |
Clear nail polish | any | for sealing coverslips | |
Click-It EdU labeling kit | InVitrogen | C10640 | to detect newly synthesized DNA |
CO2 bubbler | Genesee Scientific | 59-181 | for anesthesia |
CO2 pad | Genesee Scientific | 59-114 | for anesthesia |
CO2 regulator and supply | any | for anesthesia | |
Confocal microscope | any | for imaging fixed, stained and mounted brains | |
cotton plugs | Genesee Scientific | 51-101 | for EdU labeling |
Drosophila vials | Genesee Scientific | 32-109 | for EdU labeling |
Fix buffer (Pipes, EGTA, Magnesium; PEM) | components sourced from various companies | for fixing adult brains; 100 mM piperazine-N,N’-bis(2-ethanesulfonic acid) [PIPES], 1 mM EGTA, 1 mM MgSO4, pH 7.0 | |
Formaldehyde | Sigma Aldrich | 252549 | for fixing adult brains, added to PEM |
Grade 3 round Whatman filters, 23 mm round | Tisch Scientific | 1003-323 | for EdU labeling |
Microfuge tubes | any | for fixing and staining reactions and for storing Minutien pins | |
Microscope slides | any | for mounting brains | |
Minutien pins | Fine Science Tools | 26002-10 | for brain injury; 12.5 μm diameter tip and 100 μm diameter rod |
mouse anti-Fasiclin II | Developmental Studies Hybridoma Bank | 1D4-s | for immunohistochemistry |
NIGHTSEA stereo microscope fluorescence adaptor | Electron Microscopy Sciences | SFA-GR | fluorescence setup for dissecting microscope |
P20, P200 and P1000 pipettors and tips | any | for measuring solutions | |
phosphate buffered saliine (PBS) | components sourced from various companies | for dissecting brains and making immunohistochemistry blocking and washing solutions; 100 mM of K2HPO4, 140 mM of NaCl, pH 7.0 | |
phosphate buffered saline with 0.1% Triton X-100 (PT) | components sourced from various companies | for washing dissected brains | |
phosphate buffered saline with 0.1% Triton X-100 + 2% bovine serum albumin (PBT) | components sourced from various companies | blocking solution for immunohistochemistry and for diluting antibodies | |
rabbit anti-PH3 | Santa Cruz Biotechnology, Inc | sc-8656-R | for immunohistochemistry |
Reinforcement labels | Avery | 5721 | to maintain space between the microscope slide and the coverslip |
Size 0 paintbrushes | any | to manipulate and stabilize adult Drosophila during injury | |
Triton X-100 | Sigma Aldrich | 93443 | |
Two pair of #5 watchmakers forceps | Fine Science Tools | 11255-20 | used to hold the Minutien pins and for brain dissections |
Vectashield | Vector Laboratories | H-1000 | mounting medium for microscope slides |