In planta measurement of nutrient and toxicant fluxes is essential to the study of plant nutrition and toxicity. Here, we cover radiotracer protocols for influx and efflux determination in intact plant roots, using potassium (K+) and ammonia/ammonium (NH3/NH4+) fluxes as examples. Advantages and limitations of such techniques are discussed.
Unidirectional influx and efflux of nutrients and toxicants, and their resultant net fluxes, are central to the nutrition and toxicology of plants. Radioisotope tracing is a major technique used to measure such fluxes, both within plants, and between plants and their environments. Flux data obtained with radiotracer protocols can help elucidate the capacity, mechanism, regulation, and energetics of transport systems for specific mineral nutrients or toxicants, and can provide insight into compartmentation and turnover rates of subcellular mineral and metabolite pools. Here, we describe two major radioisotope protocols used in plant biology: direct influx (DI) and compartmental analysis by tracer efflux (CATE). We focus on flux measurement of potassium (K+) as a nutrient, and ammonia/ammonium (NH3/NH4+) as a toxicant, in intact seedlings of the model species barley (Hordeum vulgare L.). These protocols can be readily adapted to other experimental systems (e.g., different species, excised plant material, and other nutrients/toxicants). Advantages and limitations of these protocols are discussed.
The uptake and distribution of nutrients and toxicants strongly influence plant growth. Accordingly, the investigation of underlying transport processes constitutes a major area of research in plant biology and agricultural sciences1,2, especially in the contexts of nutritional optimization and environmental stresses (e.g., salt stress, ammonium toxicity). Chief among methods for the measurement of fluxes in plants is the use of radioisotopic tracers, which was developed significantly in the 1950s (see e.g., 3) and continues to be widely used today. Other methods, such as measurement of nutrient depletion from the root medium and/or accumulation in tissues, use of ion-selective vibrating microelectrodes such as MIFE (microelectrode ion flux estimation) and SIET (scanning ion-selective electrode technique), and use of ion-selective fluorescent dyes, are also widely applied, but are limited in their ability to detect net fluxes (i.e., the difference between influx and efflux). The use of radioisotopes, on the other hand, allows the researcher the unique ability to isolate and quantify unidirectional fluxes, which can be used to resolve kinetic parameters (e.g., KM and Vmax), and provide insight into the capacity, energetics, mechanisms, and regulation, of transport systems. Unidirectional flux measurements made with radiotracers are particularly useful under conditions where the flux in the opposite direction is high, and the turnover of intracellular pools is rapid4. Moreover, radiotracer methods allow measurements to be conducted under fairly high substrate concentrations, unlike many other techniques (see ‘Discussion’, below), because the traced isotope is observed against a background of another isotope of the same element.
Here, we provide detailed steps for the radioisotopic measurement of unidirectional and net fluxes of mineral nutrients and toxicants in intact plants. Emphasis will be made on flux measurement of potassium (K+), a plant macronutrient5, and ammonia/ammonium (NH3/NH4+), another macronutrient which is, however, toxic when present at high concentrations (e.g., 1-10 mM)2. We will use the radioisotopes 42K+ (t1/2 = 12.36 hr) and 13NH3/13NH4+ (t1/2 = 9.98 min), respectively, in intact seedlings of the model system barley (Hordeum vulgare L.), in the description of two key protocols: direct influx (DI) and compartmental analysis by tracer efflux (CATE). We should note from the outset that this article simply describes the steps necessary to perform each protocol. Where appropriate, brief explanations of calculations and theory are provided, but detailed expositions of each technique’s background and theory can be found in several key articles on the subject4,6-9. Importantly, these protocols are broadly transferable to flux analysis of other nutrients/toxicants (e.g., 24Na+, 22Na+, 86Rb+, 13NO3–) and to other plant species, albeit with a few caveats (see below). We also stress the importance that all researchers working with radioactive materials must work under a license arranged through their institution’s ionizing radiation safety regulator.
1. Plant Culture and Preparation
2. Preparation of Experimental Solutions/Materials
NOTE: The following is typically performed 1 day prior to experimentation.
3. Prepare Radiotracer
CAUTION: The following safety steps should be taken prior to working with radioactivity.
4. Direct Influx (DI) Measurement
5. Compartmental Analysis by Tracer Efflux (CATE) Measurement
Figure 1 shows isotherms found using the DI technique (with 13N), for the influx of NH3 into roots of intact barley seedlings grown at high (10 mM) NH4+, and either low (0.02 mM) or high (5 mM) K+. The isotherms display Michaelis-Menten kinetics when NH3 fluxes are plotted as a function of external NH3 concentration ([NH3]ext; adjusted by changes in solution pH13). NH3 fluxes were significantly higher at low K+ than at high K+. Analysis of Michaelis-Menten kinetic parameters showed that the KM remained relatively stable between K+ levels (150 vs. 90 µM at low and high K+, respectively), while Vmax is strongly reduced at high K+ (205 vs. 80 µmol g-1 hr-1). Thus, the data indicate that K+ level regulates nitrogen transport (Vmax effect), but not by direct competition between K+ and NH3 for binding sites of transporters (KM effect). Rather, K+ may regulate NH3 fluxes by other means, such as through modulation of aquaporin activity (for details, see 13).
DI is also useful for the capturing of relatively fast changes in influx due to nutritional shifts, or to the application of pharmacological agents. For example, Figure 2 highlights the rapid plasticity of the K+-uptake system in roots of intact barley seedlings grown at moderate (0.1 mM)-K+ and high (10 mM)-NH4+ conditions. Here, we observed a ~350% increase in K+ influx within 5 min of NH4+ withdrawal from the external solution. This “ammonium withdrawal effect” (“AWE”) was found to be sensitive to the K+-channel blockers tetraethylammonium (TEA+), barium (Ba2+), and cesium (Cs+). Using DI and electrophysiological measurements in several Arabidopsis genotypes, we were able to conclusively ascribe the vast majority of the AWE to changes in activities of the Arabidopsis K+ channel, AtAKT1, and high-affinity K+ transporter, AtHAK514.
Figure 3 plots the steady-state efflux of 42K+, over time, from roots of pre-labeled barley seedlings grown at low (0.1 mM) K+ and moderate (1 mM) NO3–. These traces show how the CATE method can reveal rapid and significant changes in efflux upon application of various pharmacological/nutritional agents. Substantial, immediate inhibition of K+ efflux was observed upon either an application of 10 mM Cs+, a K+-channel blocker, or a sharp increase in K+ provision (from 0.1 to 10 mM). These results are consistent with molecular studies describing the unique gating properties of outward-rectifying K+ channels15. By contrast, application of 10 mM NH4+ rapidly and strongly stimulated K+ efflux. This effect can be explained by the activation of outward-rectifying K+ channels via depolarization of the electrical potential gradient across the plasma membrane of root cells16, which is known to occur upon introduction of NH4+17. Thus, using this method, we have been able to demonstrate, in planta, that K+ channels mediate K+ efflux in roots of barley10.
Lastly, Table 1 shows CATE parameters extracted from measurements of steady-state 42K+ efflux ([K+]ext = 0.1 mM) in barley seedlings grown either with 1 mM NO3– or 10 mM NH4+, the latter representing a toxic scenario. The high NH4+ condition brings about a suppression of all K+ fluxes, and a significant decline in cytosolic K+ concentration ([K+]cyt), which is normally homeostatically maintained at ~100 mM under healthy growth conditions18 (as observed, e.g., in Table 1, under NO3– supply).
Figure 1. 13NH3 influx isotherms reveal how K+ supply regulates nitrogen transport. NH3 influx as a function of varying external concentrations of NH3 ([NH3]ext) in intact roots of barley seedlings grown at high (10 mM) NH3/NH4+ and either low (0.02 mM, red) or high (5 mM, blue) K+. Michaelis-Menten analyses of isotherms reveal that high-K+ provision has relatively little effect on the substrate affinity (i.e., KM) of NH3-uptake transporters, but significantly reduces the transport capacity (i.e., Vmax; see ‘Representative Results’). Note, changes in [NH3]ext were established by shifting the external solution pH with NaOH, and thus the NH3:NH4+ ratios, as per the Henderson-Hasselbalch equation. Error bars indicate SEM of 4-7 replicates. (Reproduced from Coskun et al. Rapid ammonia gas transport accounts for futile transmembrane cycling under NH3/NH4+ toxicity in plant roots. Plant Physiol. 163, 1859-1867 (2013).)
Figure 2. NH4+ withdrawal significantly stimulates channel-mediated K+ influx. K+ influx at steady state, and upon withdrawal of NH4+, in roots of intact barley seedlings grown at low (0.1 mM) K+ and high (10 mM) NH4+. The effect of K+-channel blockers (10 mM TEA+, 5 mM Ba2+, and 10 mM Cs+) on the stimulated K+ influx is pronounced. Asterisks denote different levels of significance between -NH4+ and treatment pairs (*0.01 < P < 0.05, ***P < 0.001; one-way ANOVA with Dunnett’s multiple comparison post-hoc test). Asterisks in parentheses denote level of significance between control and -NH4+ pair (Student’s t-test). Error bars indicate SEM of >4 replicates. (Reproduced from Coskun et al. Capacity and plasticity of potassium channels and high-affinity transporters in roots of barley and Arabidopsis. Plant Physiol. 162, 496-511 (2013).)
Figure 3. K+ efflux is channel-mediated under low-K+ conditions. Steady-state 42K+ efflux in roots of intact barley seedlings grown at low (0.1 mM) K+ and moderate (1 mM) NO3–, and the immediate effects (at t = 15.5 min; see arrow) of 10 mM CsCl, 5 mM K2SO4, and 5 mM (NH4)2SO4 on efflux. Each plot represents the mean of 3-13 replicates (SEM <15% of the mean). (Reproduced from Coskun et al. Regulation and mechanism of potassium release from barley roots: an in planta 42K+ analysis. New Phytol. 188, 1028-1038 (2010).)
[K+]ext | N source | Influx | Efflux | Net Flux | E:I Ratio | Pool Size | Half-life |
(mM) | (mM) | (µmol g-1 hr-1) | (mM) | (min) | |||
0.1 | 1 NO3– | 7.22 ± 0.23 | 1.86 ± 0.18 | 5.36 ± 0.18 | 0.25 ± 0.02 | 98.84 ± 14.08 | 28.18 ± 3.40 |
10 NH4+ | 1.89 ± 0.13 | 0.57 ± 0.05 | 1.32 ± 0.10 | 0.30 ± 0.01 | 28.39 ± 3.40 | 32.50 ± 4.69 |
Table 1. Steady-state K+ fluxes and compartmentation under various N provisions. Steady-state flux and compartmental analysis of barley seedlings grown at 0.1 mM K+, and either moderate NO3– (1 mM, as Ca2+ salt) or high NH4+ (10 mM, as SO42- salt). Errors indicate ± SEM of >8 replicates. (Reproduced from Coskun et al. Regulation and mechanism of potassium release from barley roots: an in planta 42K+ analysis. New Phytol.188, 1028-1038 (2010) and Coskun et al. Capacity and plasticity of potassium channels and high-affinity transporters in roots of barley and Arabidopsis. Plant Physiol.162, 496-511 (2013).)
As demonstrated in the examples above, the radiotracer method is a powerful means of measuring unidirectional fluxes of nutrients and toxicants in planta. Figure 1 shows that NH3 influx can reach in excess of 225 µmol g-1 hr-1, which is perhaps the highest bona fide transmembrane flux ever reported in a plant system13, but the magnitude of this flux would not be visible if only net fluxes were measured. This is because a large efflux of NH3 occurs at the same time as influx, in a futile cycling scenario that can result in a pronounced underestimate of influx that increases with labeling time13. By supplementing the tracer technique with electrophysiological analysis, we were able to demonstrate that under the conditions of Figure 1, both influx and efflux of 13N is primarily of the neutral gas NH3, and not of its conjugate acid NH4+ (for details, see 13). This is the first in planta demonstration of rapid NH3 gas fluxes in roots, and as such, provides important preliminary evidence towards unraveling the transport mechanism that lies at the heart of NH3/NH4+ toxicity in higher plants2,13. Molecular work in heterologous expression systems has demonstrated that NH3 can flow via aquaporins in plants19, and the data from Figure 1, along with recent pharmacological evidence, has begun to corroborate such findings at the level of the intact organism13.
Figures 2 and 3 also provide excellent examples of the utility of measuring unidirectional fluxes with radiotracers. Using DI with 42K+, we were able to demonstrate that ion channels are not responsible for steady-state K+ uptake in roots of barley seedlings grown at low K+ and high NH4+, in contrast to the model system Arabidopsis14. Only when NH4+ was withdrawn did we see evidence for the engagement of K+ channels (Figure 2). Although the net flux of K+ is also stimulated by NH4+ withdrawal (as shown by increased tissue K+ content14), only by measuring unidirectional influx were we able reveal the magnitude and rapid onset of this phenomenon. Moreover, by conducting DI measurements with mutants and pharmacological agents, we were able to identify which transport proteins were involved. Similarly, by applying nutritional and pharmacological agents while monitoring tracer efflux (Figure 3), we were able to characterize and identify mechanisms of K+ efflux from barley root cells10. Thus, techniques such as DI and CATE can be instrumental to the understanding of transport characteristics for a critical macronutrient.
As noted in the protocol, often the position of the sample relative to the detector in the gamma counter can influence the quantity of radiation measured. Thus, if a 1-ml sample is “topped up” with 19 ml of H2O, the counts measured (cpm) in the 20-ml sample can be significantly lower than in the 1-ml sample, despite having the same amount of radiotracer. Therefore, a Df can be applied to correct for this apparent ‘dilution’ of radioactivity. This issue is often not explicitly stated by manufacturers of detection instrumentation and must be worked out by the individual researcher. Similarly, the effectiveness of shielding within detectors against ambient radiation (i.e., from nearby samples within the counter) can be exaggerated by manufacturers, and such issues should be worked out for individual measuring systems.
A major advantage of the tracer technique is its non-invasiveness, which provides a means to measure fluxes, intracellular pool sizes, and exchange rates, under steady-state conditions. For example, with CATE, we could non-invasively quantify cytosolic concentrations of K+ (Table 1). This can be preferable to alternative methods such as impalement of cells with ion-selective microelectrodes18, which imparts physical and possibly chemical disturbances to the cell. In addition, the tracer technique is unique in that it provides a comprehensive view of fluxes and compartmentalization for whole organs and intact plants. This is important if one is interested in understanding whole-plant nutrient dynamics, toxicity, and ultimately, performance in the field. Lastly, radiotracer methods allows for very sensitive measurements to be conducted under fairly high substrate concentrations. Traditional depletion experiments and microelectrode techniques can experience issues of background interference and thus, may require that the external concentration of the substrate of interest is lowered well below that provided during growth. This could be problematic if one is interested in studying “steady-state” conditions of high substrate concentrations (such as with NH3/NH4+ toxicity or “high-K+” conditions; see above).
It should be noted that, like all techniques, measuring fluxes with radiotracers is not without its limitations. For example, the availability of radiotracers can be problematic, particularly for very short-lived isotopes like 13N that require close proximity to a production facility such as a cyclotron. Another major limitation is that at times, it can be difficult to discriminate between fluxes that are occurring across membranes and those occurring extracellularly. Such distinctions call for rigorous phase testing7,10,20. In the case of K+ efflux, only after careful examination were we able to confirm that steady-state 42K+ release from roots was occurring not across cell membranes at high [K+]ext (>1 mM)10, but from extracellular spaces (c.f., Figure 3). Such issues can be resolved by examining the effect of a wide range of pharmacological agents, or through thermodynamic analyses, which have shown, for example, that very high Na+ fluxes reported under saline conditions would be energetically unfeasible were they to proceed across cell membranes21,22.
The authors have nothing to disclose.
This work was supported by the Natural Sciences and Engineering Council of Canada (NSERC), the Canada Research Chair (CRC) program, and the Canadian Foundation for Innovation (CFI).
Name of Material/ Equipment | Company | Catalog Number | Comments/Description |
Gamma counter | Perkin Elmer | Model: Wallac 1480 Wizard 3" | |
Geiger-Müller counter | Ludlum Measurements Inc. | Model 3 survey meter | |
400-mL glass beakers | VWR | 89000-206 | For pre-absorption, absorption, and desorption solutions |
Glass funnel | VWR | 89000-466 | For efflux funnel |
Large tubing | VWR | 529297 | For efflux funnel |
Medium tubing | VWR | 684783 | For bundling |
Small tubing | VWR | 63013-541 | For aeration |
Aeration manifold | Penn Plax Air Tech | vat 5.5 | To control/distribute pressurized air into solutions |
Glass scintillation vials | VWR | 66022-128 | For gamma counting |
Glass centrifuge tubes | VWR | 47729-576 | For spin-drying root samples |
Kimwipes | VWR | 470173-504 | For spin-drying root samples |
Dissecting scissors | VWR | 470001-828 | |
Forceps | VWR | 470005-496 | |
Low-speed clinical centrifuge | International Equipment Co. | 76466M-4 | For spin-drying root samples |
1-mL pipette | Gilson | F144493 | |
10-mL pipette | Gilson | F144494 | |
1-mL pipette tips | VWR | 89079-470 | |
10-mL pipette tips | VWR | 89087-532 | |
Analytical balance | Mettler toledo | PB403-S/FACT |