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Pattern-based Search of Epigenomic Data Using GeNemo
JoVE Journal
Bioengenharia
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JoVE Journal Bioengenharia
Pattern-based Search of Epigenomic Data Using GeNemo

Pattern-based Search of Epigenomic Data Using GeNemo

4,910 Views

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06:38 min

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October 08, 2017

DOI:

10.3791/56136-v

DOI:
10.3791/56136-v

•

06:38 min
October 08, 2017

•

3 Views
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1Department of Bioengineering,University of California San Diego

Summary

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Unlike DNA sequence data, epigenomic data are not readily subjected to text-based searches. Presented here are the procedures to use an upgraded version of GeNemo, a web-based bioinformatics tool, to conduct pattern-based searches for similarities in epigenomic data comparing available online databases including Encyclopedia of DNA Elements with user's data.

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Cite this Article

Zheng, A., Cao, X., Zhong, S. Pattern-based Search of Epigenomic Data Using GeNemo. J. Vis. Exp. (128), e56136, doi:10.3791/56136 (2017).

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