We describe a basic experimental approach for analysis of termination of transcription by RNA polymerase II in vivo using BrUTP by the strand-specific transcription run-on (TRO) approach in budding yeast. This protocol can be extended to study transcription termination by other RNA polymerases both in yeast and higher eukaryotes.
Dhoondia, Z., Tarockoff, R., Alhusini, N., Medler, S., Agarwal, N., Ansari, A. Analysis of Termination of Transcription Using BrUTP-strand-specific Transcription Run-on (TRO) Approach. J. Vis. Exp. (121), e55446, doi:10.3791/55446 (2017).