New protocols are described here to isolate and characterize microparticles derived from human and mouse neutrophils. These protocols utilize ultracentrifugation, flow cytometry, and immunoblotting techniques to analyze microparticle content, and they can be used to study the role of microparticles derived from various cell types in cellular function.
Polymorphonuclear neutrophil-derived microparticles (PMN)-MPs) are lipid bilayer, spherical microvesicles with sizes ranging from 50–1,000 nm in diameter. MPs are a newly evolving, important part of cell-to-cell communication and signaling machinery. Because of their size and the nature of their release, until recently MP existence was overlooked. However, with improved technology and analytical methods their function in health and disease is now emerging. The protocols presented here are aimed at isolating and characterizing PMN-MPs by flow cytometry and immunoblotting. Moreover, several implementation examples are given. These protocols for MP isolation are fast, low-cost, and do not require the use of expensive kits. Furthermore, they allow for the labeling of MPs following isolation, as well as pre-labeling of source cells prior to MP release, using a membrane-specific fluorescent dye for visualization and analysis by flow cytometry. These methods, however, have several limitations including purity of PMNs and MPs and the need for sophisticated analytical instrumentation. A high-end flow cytometer is needed to reliably analyze MPs and minimize false positive reads due to noise or auto-fluorescence. The described protocols can be used to isolate and define MP biogenesis, and characterize their markers and variation in composition under different stimulating conditions. Size heterogeneity can be exploited to investigate whether the content of membrane particles versus exosomes is different, and whether they fulfill different roles in tissue homeostasis. Finally, following isolation and characterization of MPs, their function in cellular responses and various disease models (including, PMN-associated inflammatory disorders, such as Inflammatory Bowel Diseases or Acute Lung Injury) can be explored.
Recently, "microparticles/microvesicles" originating from the cell cytosol or plasma membrane have become of great scientific interest, as emerging data suggest that these structures, ranging from 50-1,000 nm in diameter, can carry biological information and serve as a non-canonical method of cellular communication. Immune cell-derived MPs and particularly those produced by polymorphonuclear neutrophils (PMNs) are of great interest given the important role of PMNs in host defense1,2, inflammatory responses3, and wound-healing4. Intriguingly, thus far, numerous reports have shown both pro-inflammatory and anti-inflammatory functions of PMN-MPs5, suggesting a potential context-, disease-, species-, and organ-specific role of MPs.
Described protocols in this communication provide a cost-effective, innovative, and adaptable method to study the function of MPs in health and disease. They are applicable to many model organisms, organs, and stimulation conditions. They allow for the identification of several types of MPs and can be used in the future to address their pro-inflammatory and anti-inflammatory functions. As an example, described here is how to study the function of PMN-MPs in epithelial wound healing in vitro and in vivo. The presented protocol for isolation of mouse bone marrow-derived PMNs was adapted with some modifications from a previously described method6.
Furthermore, protocols described in this study allow for the detection and characterization of specific markers that can be found on PMN-MPs by two complementary methods: Western blot and flow cytometry. We find that immunoblotting of MPs using standard protocols5 is easy and reliable, however, recent advances in sensitivity of flow cytometry instruments, and improved noise-to-signal ratio now allow for further analysis of MPs using this method. The described protocols in this study incorporate recent advances and recommendations from original research articles, including modifications to centrifugation speed and time, the addition of sample filtering and freezing/storage conditions7,8, and how to reduce the "background noise", improve the detection limit of PMN-MPs, and discriminate between different sizes of MPs.
All animal work was approved by the Northwestern IACUC. All experiments were completed in accordance and compliance with all relevant regulatory and institutional guidelines. For human subjects donating blood, an informed consent was presented and signed; in addition, all human subjects in this study were treated in accordance with the institutional and federal guidelines for human welfare.
NOTE: The protocol steps are listed under the following subsections: (i) Mouse Bone Marrow Cell Isolation; (ii) PMN Isolation from Murine Bone Marrow; (iii) PMN Isolation from Human Blood; (iv) MP Isolation from PMN Supernatants (by Ultracentrifugation); (v) Characterization of MPs by Western Blotting; (vi) Characterization of MPs by Flow Cytometry; (viii) Application of isolated MPs to Study Wound Healing
1. Mouse Bone Marrow Cell Isolation
2. PMN Isolation from Murine Bone Marrow
3. PMN Isolation from Human Blood
4. MP Isolation from Activated PMN Supernatants
NOTE: A similar protocol is used for the isolation of MPs from murine and human PMNs.
5. Examination of PMN-MPs by Western Blotting
6. Examination of PMN-MPs by Flow Cytometry
7. Applications for Isolated PMN-MPs to Study PMN Function in Wound Healing
Representative flow cytometric analysis of MPs that were isolated from human and mouse PMNs are shown in Figure 1. The size heterogeneity of PMN-MPs can be assessed by comparison to known sized beads as shown in Figure 1A, B for human MPs. Note, no significant differences in size heterogeneity were observed between mouse and human MPs. Similarly, using flow cytometry and fluorescence labeling, expression of protein/s of choice by isolated MPs of either mouse or human origin can be determined. For example, expression of Phosphatidyl serine (PhS) can be examined by Annexin V staining. Murine bone marrow PMN-MPs are shown in Figure 1C, D. Expression of several markers of choice can also be assessed as shown for Annexin V and CD11b staining of human MPs, Figure 2A, B. Another method to detect PMN-MPs by flow cytometry is to stain freshly-isolated PMNs prior to stimulation as shown in Figure 2C. For example, PMN staining with the lipid marker N-(2-aminoethyl) maleimide-FITC prior to fMLF stimulation results in the release of green MPs, that can be readily detected by flow. Of note, while staining with N-(2-aminoethyl) maleimide-FITC has been previously used to label and detect MPs that were obtained from peripheral human blood10 or injected into animals11, the use of other markers for labeling purposes for in vitro or in vivo application should be determined by each investigator. In addition to flow cytometry, PMN-MPs can be analyzed by immunoblotting for proteins of interest. As shown in Figure 3, MPs derived from human PMNs that were stimulated with several known activators, were examined for the expression of key inflammatory (matrix metallopeptidase 9 (MMP-9) and myeloperoxidase (MPO)) and anti-inflammatory (Annexin A1) molecules. As evident from representative immunoblots, PMN stimulation with IFNγ (50 ng/mL), PMA (200 nM), and fMLF (1 µM) resulted in MPs expressing varying levels of MMP-9. However, only perturbation of the actin cytoskeleton by Latrunculin B (1 µM) prior to stimulation with fMLF (5 µM) led to abundant presence of MPO in PMN-MPs. Similarly, varying levels of Annexin A1 (high to no detection) were detected on MPs following the described activating conditions. These results suggest that PMN-MP composition is stimulus-dependent.
Finally, Figure 4 shows how isolated PMN-MPs can be used to study wound healing in vitro and in vivo in colonic injury. PMN-MPs can be added to scratch-wounded epithelial monolayers in cultures, where healing can be monitored by imaging acquisition at pre-determined time points. MPs can further be microinjected directly into colonic wounds, that were generated by biopsy forceps and endoscopic imaging9, and their effect on healing can be assessed. For both in vitro and in vivo analysis of wound healing, images of inflicted wounds are acquired immediately post wounding (or otherwise as specified) and continuously through the healing process at pre-determined time points. Using commercially available image analysis software, changes in wound area (size) are measured and used to determine the wound closure rate. Application of PMN-MPs that contain MPO to either cultured epithelial monolayers or in vivo to colonic wounds has detrimental effects, leading to delayed healing9.
Figure 1. Analysis of PMN-MP size and surface markers by flow cytometry. (A) Flow cytometer optimized control beads (see Table of Materials) of known sizes and scatter values are shown in the SSC and FSC orthogonal representation. The beads are used to get a relative size comparison with a PMN-MP sample shown in B. (B) Human PMN-MPs were isolated and analyzed by flow cytometry using conditions described for the beads. The heterogeneity in MP sizes can be seen. (C–D) MPs derived from fMLF-stimulated murine bone marrow PMNs were analyzed by flow cytometry. Representative flow diagrams show unstained (C) or Annexin V-FITC stained (D) MPs. Rectangular area shows Annexin V-positive MPs (FITC-positive MPs). SSC: Side Scatter; FSC: Forward Scatter; PhS: Phosphatidyl serine. Please click here to view a larger version of this figure.
Figure 2. PMN-MP staining and analysis by flow cytometry. (A) Unstained and (B) Annexin V-FITC- and hCD11b-APC-stained MPs. Square area encloses an Annexin V/CD11b double positive population of PMN-MPs. (C) Freshly isolated human PMNs (1 x 106) were stained with a fluorescent dye, N-(2-aminoethyl) maleimide-FITC and stimulated with fMLF. MPs were isolated from cell supernatants and analyzed by flow cytometry. Rectangular area encloses a N-(2-aminoethyl) maleimide-FITC positive MP population (M-FITC, Y-axis label). Please click here to view a larger version of this figure.
Figure 3. Composition of PMN-MPs is stimulus-dependent. (A) Human PMNs were stimulated with either IFNγ, TNFα, fMLF, PMA, or a combination of latranculin B followed by fMLF (LtB- fMLF). MPs were isolated from the resulting cell supernatants by ultracentrifugation and protein lysates were prepared in 1% SDS buffer. Proteins were separated by size electrophoretically in a 10% polyacrylamide gel, transferred to a nitrocellulose membrane, and probed for either an MMP-9, MPO, or Annexin A1 primary antibody followed by the appropriate HRP-conjugated secondary antibodies. (B) Representative Electron Microscopy images of human PMN-MPs depict size heterogeneity. An exosome <100 nm in size is indicated by the white arrow. Scale bar = 250 nm (left and right panels). Please click here to view a larger version of this figure.
Figure 4: The use of isolated PMN-MPs in studying the role of PMNs in epithelial wound healing. (A) Caco-2 BBe human intestinal epithelial cells were plated to confluency, scratch-wounded, and subjected to MPs derived from 3 million PMNs, which were added immediately post-wounding. Representative images show wound closure (48 h post-wounding) in control (left panels) and PMN-MP-treated epithelial cells (right panels). Scale bar = 100 µm. (B) To examine the effect of PMN-MPs on colonic wound healing in vivo, isolated PMN-MPs were injected directly into the wound area using an endoscopy-based microinjection system (at 24 h post-wounding, the colonic wound is outlined by a dashed line and the injection needle site is shown by a white arrow). Wound closure was assessed 3 days later (4 days post-wounding) by endoscopic imaging. Scale bar = 300 µm. (C) 4 days post-wounding mice were euthanized and colonic mucosal wounds were extracted with scissors, embedded in optimum cutting temperature (O.C.T) compound and frozen with liquid nitrogen. Eight micrometer sections of the wounds were stained for E-cadherin (green) and the nuclear stain DAPI (blue) to assess the level of re-epithelialization (upper panels), or for DAPI (blue) and Ki67 (red) to visualize the total and proliferating epithelial cells at the wound edge (lower panels). Scale bar = 50 µm. Please click here to view a larger version of this figure.
Protocols for the isolation and characterization of PMN-derived MPs are described in this communication. Several key critical points must be taken into account for the success of the procedure. First, PMNs must be isolated fresh and used in experiments within 2 h of isolation to prevent spontaneous activation and degranulation. All handling of PMNs during isolation and up to the point of stimulation must be performed on ice to prevent activation and premature MP release12. Second, ultracentrifugation for 1 h or more maximizes the pelleting of MPs. Third, for analysis by flow cytometry, the instrument must be properly calibrated with a mix of instrument-specified fluorescent beads (the beads type is adjusted to a particular instrument) to correctly define MP sizes. For example, while one manufacturer of flow cytometers recommends using FSC beads as a size-related parameter, others have been optimized for SSC beads. In addition, the flow cytometer to be used for MP analysis must be equipped with upgraded electronics to best resolve MPs from the background noise.
To correctly identify MPs in addition to size parameters, the use of fluorescence staining as described in the procedures above is highly recommended. Furthermore, all solutions during the preparation and isolation should be filtered through a 0.1 µm filter system to minimize inclusion of dust particles or other precipitates that will increase the background noise during acquisition by flow cytometry. Importantly, storage conditions of MPs should be considered. Little evidence8, and our own unpublished observations, suggest that MP freezing leads to membrane rupture and MP breakage. Finally, varying PMN activation conditions and timing may change and improve MP yield.
There are some limitations to this method. Isolation of mouse PMNs from bone marrow is typically not pure (~85–90%) and is contaminated by other immune cells (primarily mononuclear lymphocytes) as was determined by flow cytometric analysis. Thus, the resulting isolates may include small amounts of MPs released by other immune cells. Alternatives are available and include isolation of PMNs by commercially available magnetic beads, however, this would be a longer and a significantly costlier procedure. Finally, without fluorescence labeling, in addition to size parameters, definitive differentiation of MPs from dust or other soluble or airborne particles of similar sizes that can contaminate the sample is challenging and error-prone.
In the future, sorting of PMN-MPs labeled with specific markers will help elucidate MP composition under specific stimulatory conditions or models of disease, and hopefully allow for the use of MPs as diagnostic markers and potential therapeutic targets to treat inflammatory diseases.
The authors have nothing to disclose.
We are grateful for the technical assistance of Dr. Suchitra Swaminathan who runs the Northwestern Feinberg School of Medicine Flow Cytometry core. Funding was provided by (NIH) DK101675.
DMEM | Corning | 10-041-CV | |
Fetal Bovine Serum (Heat inactivated) | Atlanta Biologics | S11150 | |
Penicillin/Streptomycin (10,000 units penicillin / 10,000 mg/ml strep) | GIBCO | 15140 | |
0.5 M EDTA | Fisher | BP2482 | |
Sodium chloride | Sigma | S9888 | Sterile and filtered through a 0.1 micron filter unit |
Sterile filtered Histopaque 1077 | Sigma | 10771 | |
Sterile filtered Histopaque 1119 | Sigma | 11191 | Density 1.119 g/ml. Solution of polysucrose and sodium diatrizoate. Bring to room temperature |
Phosphate Buffered Saline (PBS) without Calcium and Magnesium | Cellgro | 210-40-CV | |
Ethyl Alcohol (200 proof) | Decon labs | 2701 | |
HBBS | Corning | 21-022-CV | |
Trypan Blue Solution, 0.4% | Sigma | T8154 SIGMA | Diluted 1:2 for cell viability counting |
Isoflurane | Abbot | 50033 | |
Anti-human CD11b-APC conjugated | Biolegend | 301350 | Clone ICRD44 (Final concetration: 1 µg/mL) |
BODIPY FL | Invitrogen | B10250 | N-(2-aminoethyl) maleimide |
Annexin V Binding Buffer | Biolegend | 422201 | |
Calibration Beads for Flow Cytometry | BioCytex | 7803 | |
FITC Annexin V | Biolegend | 640906 | |
Polymorphprep | Axis-Shield PoC AS | Sodium diatrizoate/Dextran 500, density 1.113 g/ml | |
C57BL/6 mice | Jackson Labs | ||
15 ml centrifuge tubes | Corning | 430053 | |
50 ml centrifuge tubes | BD Falcon | 352070 | |
25 ml serological pipettes | Celltreat | 229225B | |
10 ml serological pipettes | Celltreat | 229210B | |
5 ml serological pipettes | Celltreat | 229205B | |
Pasteur pipettes | BD Falcon | 357575 | |
25 G x 5/8 in. Needles (precision glide needles) | BD | 305122 | |
100 µm cell strainers | Celltreat | 229485 | |
Vacutainer tubes | BD | 367251 | |
Equipment | |||
LSR Fortessa Special Order Research Product (SORP) | BD | (SORP) | |
Swinging bucket centrifuge | ThermoFisher Scientific | 75007210 | |
Ultracentrifuge | Beckman | (L8-80 M) | |
Micro-centrifuge | ThermoFisher Scientific | VV-17703-15 (Fresco 17) | |
Swinging bucket centrifuge | ThermoFisher Scientific | 75004503 (Megafuge 40R) | |
Biopsy forceps, 28 cm | Storz | 27071zj | |
Software | |||
Image J | National Institute of Health | Open source |