Antimicrobial Susceptibility Testing of Mycobacterium Tuberculosis Complex for First and Second Line Drugs by Broth Dilution in a Microtiter Plate Format

Each laboratory needs to perform a risk assessment in collaboration with their Institutional Biological Safety Officer to determine the appropriate biosafety level for preparation of the inoculum and for pipetting of the inoculum into the plate. In our laboratory, we utilize biosafety level 3 laboratory (BSL3) practices until the microtiter plates are inoculated, and sealed with a plastic adhesive seal. These plates are then placed inside a plastic bag, which is heat-also sealed. Incubation and interpretation reading of the microtiter plate is conducted in a biosafety level 2 laboratory (BSL2).

1. Labeling of materials

1. Label a blood agar plate, three Middlebrook 7H10 plates, Middlebrook 7H9 broth, a saline tween glass bead tube and a microtiter AST plate with the appropriate identifiers (e.g., patient name, medical record number) in the BSL2.
2. Label the blood agar and 7H10 plated as “purity check”. Periodic colony counts of the inoculum are recommended to ensure that an appropriate concentration of organisms is used in the test. Colony counts when performed will need to have two of the 7H10 plates labeled with “1/1 colony count” and “1/50 colony count”.

2. Technologist preparations to go into the BSL3

1. Appropriate personal protective equipment is necessary to work in the BSL3 and includes solid-front gown, head cover, gloves, shoe covers, and a respirator. Each institution should establish their own respiratory protection plan in collaboration with their institution’s Industrial Hygiene Officer. In our laboratory, we have several respirators available, including powered air purifying respirators (PAPRs) and fitted HEPA-filtered, N95 half-face respirators.

3. Preparation of the biological safety cabinet

1. In the BSL3, prepare the biological safety cabinet (BSC) by disinfecting the surface and placing a paper towel soaked with disinfectant approximately 6 inches from the air vent panel.
2. Place a waste container on the left, and small nephlometer and vortexer on the right.
3. Inoculating loops, pipetors and tips are placed beside the paper towel.
4. Place a rack with the organism (in broth or on solid medium) and the McFarland 0.5 standard on the paper towel.

4. Calibration of the nephelometer

1. Place a saline tween glass bead tube in the nephelometer and set the instrument to zero using the saline tween blank.
2. Place the McFarland 0.5 standard in the nephelometer and calibrate according the manufacturer’s instructions.

5. Preparation of the Inoculum

1. Working in the BSC, scrape colonies from solid medium using a sterile loop into the appropriately labeled saline tween glass bead tube until a ≥0.5 McFarland Standard is obtained.
2. Visually inspect the sample, and compare to the McFarland Standard.
3. Vortex sample for 30-60 seconds.
4. Allow the inoculum to settle for 15 minutes (set a timer).

6. Inoculation of the microtiter plate

1. Adjust the inoculum with saline tween broth using the nephelometer calibrated to the McFarland 0.5 in steps 4.1 and 4.2. This must be completed within 30 minutes (per manufacturer specifications).
2. Use a 200 μL pipetter and a LONG aerosol resistant pipet tip to remove 100 μL of inoculum from the TOP 1/3^rd of the saline bead tween tube. Inoculate the Middlebrook 7H9 Broth. Slowly vortex the inoculated 7H9 broth for 20 seconds.
3. Remove the AST microtiter plate from manufacturer’s package. Do NOT use if the desiccant is blue or if the foil package is damaged.
4. Prepare a 1:50 dilution tube for use later in the preparation of the 1:50 dilution by pipetting 50 μL of sterile water into a sterile tube.
5. Carefully pour the 7H9 broth inoculum into a trough. AVOID GENERATING AEROSOLS.
6. Place the AST microtiter plate with the label facing you.
7. Use a 12-channel pipetter to add 100 μL of the inoculum to each well.
8. Prepare dilutions for colony counts:
   1. The 1/1 dilution is prepared from the positive control well (H12) by streaking 1 μl loop on the 7H10 plate labeled “1/1”.
   2. The 1/50 dilution is prepared by inoculating a 1 μl loop from the positive control well (H12) and swirling it into the tube with 50 μl of water tube prepared above. Streak 1 μL of this dilution to the plate labeled “1/50”.
9. Inoculate the purity plates from the trough by pipetting 50 μL onto an appropriately labeled blood agar and 7H10 plate and streak for isolation.
10. Place an adhesive seal on the AST microtiter plate. Press firmly on each well to assure adequate sealing by using the white back of the seal. Avoid creases.
11. Disinfect the microtiter plate by wiping it with a paper towel soaked with a tuberculocidal disinfectant and place microtiter plate in a plastic bag and close with a heat seal or tape.
    1. The plastic bag serves as a secondary container to ensure that all broth is contained should there be a leak or spill of the primary plate.

7. Disinfection of materials and biological safety cabinet

1. To avoid producing aerosols, place another trough on top of the inoculated trough before placing it gently into the discard container.
2. Disinfect all materials including nephlometer, vortexer, plates, tubes, etc. by wiping down with a tuberculocidal disinfectant and wait the appropriate time to insure disinfection according to the manufacturer’s instructions before removing from the BSC. For example, Prospray, the tuberculocidal disinfectant we use, requires 15 minutes to kill mycobacteria.
3. Place the discard container in a biohazard bag and seal before autoclaving.

8. Incubation

1. Plates should be incubated with media down and care should be taken to avoid spilling or splashing any liquid.
2. Incubate the AST microtiter plate plate, 7H10 and blood agar plates in a 35-37°C incubator with 5-10% CO₂ with 5-10% CO₂ in the BSL2 laboratory.
   1. In our laboratory, this is acceptable because the plate is well-sealed and inside a sealed plastic bag.
3. No more than 2 microtiter AST plates should be stacked in the incubator according to the manufacturer’s instructions.

9. Representative results

Interpretation of results:

Sealed AST microtiter plates can be read manually using a mirror as an aid or with an automated plate reader such as the Vizion (TREK Diagnostics). The plates can be examined as soon as 7 days after inoculation. Examine the growth control wells in positions H11 and H12 to determine if they are positive (ie., have a deposit of cells at the bottom of the well). If the growth control wells are not positive, reincubate the plate and re-examine periodically (eg., day 10, day 14) until the growth control wells are positive.

1. Mirror read:
   1. Place sealed AST microtiter plate onto the platform;
   2. Read growth control wells after 7 days of incubation; if this is negative, reincubate AST microtiter plate;
   3. If the growth controls are acceptable, then read the drug-containing wells. For for each drug, record the first dilution that has no growth by comparing the drug wells with the growth control.
   4. Growth appears as turbidity or as a deposit of cells at the bottom of a well.
2. Instrument Read: follow the manufacturers instructions; the instructions below are an example of how the reading would be done with the Vizion platform:
   1. Log in.
   2. Use “MYCOTB” AST plate software.
   3. Place sealed plate with the barcode facing the user. Growth appears as turbidity or as a deposit of cells at the bottom of a well.
   4. Read growth controls; if this is negative, reincubate AST microtiter plate; if positive read the plate by touching the screen with the first well of each drug that does not show growth.

Read purity plates. The blood agar plate should show no growth after 48 hours and the 7H10 purity plate should have confluent growth of one organism type. If contaminated, the AST microtiter test needs to be repeated from a pure culture.

Calculate colony counts from the positive control well using the table below:

Colony Count Key

There may be trailing with para-aminosalicylic acid in some strains of Mycobacterium tuberculosis. This can be interpreted by looking at all wells that have pellets and using the first well that has the same size pellet as the next dilution as the end point. Resistance is rare with this drug.

Figure 1. Representative results using the MYCOTB plate.