This protocol provides instructions for direct observation of radially migrating cortical neurons. In utero electroporation, organotypic slice culture, and time-lapse confocal imaging are combined to directly and dynamically study the effects of overexpression or downregulation of genes of interest in migrating neurons and to analyze their differentiation during development.
In utero electroporation is a rapid and powerful approach to study the process of radial migration in the cerebral cortex of developing mouse embryos. It has helped to describe the different steps of radial migration and characterize the molecular mechanisms controlling this process. To directly and dynamically analyze migrating neurons they have to be traced over time. This protocol describes a workflow that combines in utero electroporation with organotypic slice culture and time-lapse confocal imaging, which allows for a direct examination and dynamic analysis of radially migrating cortical neurons. Furthermore, detailed characterization of migrating neurons, such as migration speed, speed profiles, as well as radial orientation changes, is possible. The method can easily be adapted to perform functional analyses of genes of interest in radially migrating cortical neurons by loss and gain of function as well as rescue experiments. Time-lapse imaging of migrating neurons is a state-of-the-art technique that once established is a potent tool to study the development of the cerebral cortex in mouse models of neuronal migration disorders.
The neocortex is the major site of cognitive, emotional, and sensorimotor functions. It is composed of six horizontal layers oriented in parallel to the surface of the brain. During development progenitor cells in the lateral wall of the dorsal telencephalon give rise to projection neurons that migrate radially towards the pial surface and acquire a layer type-specific neuronal identity. After being generated in the ventricular/subventricular zones (VZ/SVZ) these neurons become transiently multipolar and slow their migration. After a short stay in the intermediate zone (IZ) they switch to a bipolar morphology, attach to the radial glial scaffold, and continue radially oriented migration into the cortical plate (CP). Upon reaching their final target projection neurons detach from the radial glial processes and acquire layer-specific identity. Mutations in genes affecting different steps of neuronal migration can cause severe cortical malformation, such as lissencephaly or white matter heterotopia1,2.
In utero electroporation is a rapid and powerful technique to transfect neural progenitor cells in the developing brain of rodent embryos3,4. With this technique it is possible to knockdown and/or overexpress genes of interest in order to study their functions in developing neurons. This method has specifically helped to describe the morphological details and characterize the molecular mechanisms of the process of radial migration5,6,7,8,9. Radially migrating neurons undergo dynamic changes in cell shape, migration speed, as well as migratory direction, which require direct and continuous observation over time. Organotypic slice culture and time-lapse confocal imaging of electroporated brains allow to directly observe migrating neurons over time. Using this combined approach, it is possible to analyze distinct features of migrating neurons that cannot be investigated in fixed tissue sections of electroporated brains.
We recently applied time-lapse confocal imaging of migrating neurons in slice cultures of electroporated brains to study the role of the transcription factor B cell CLL/lymphoma 11a (Bcl11a) during cortical development10. Bcl11a is expressed in young migrating cortical neurons and we used a conditional mutant Bcl11a allele (Bcl11aflox)11 to study its functions. Electroporation of Cre recombinase together with green fluorescent protein (GFP) into cortical progenitors of Bcl11aflox/flox brains allowed us to create a mosaic mutant situation, in which only few cells are mutated in an otherwise wild-type background. In this way, it was possible to study cell-autonomous functions of Bcl11a at the single cell level. We found that Bcl11a mutant neurons display reduced speed, shifts in their speed profiles, as well as random-like orientation changes during their migration10. In the outlined protocol we describe a workflow for successful electroporation and slice culture preparation12 of mouse brains, as well as time-lapse confocal imaging of cortical slice cultures.
All experimental procedures were approved by the Animal Welfare Committee (Regierungspräsidium Tübingen) and carried out in accordance by the German Animal Welfare Act and the EU Directive 2010/63/EU.
1. In Utero Electroporation
2. Organotypic Slice Culture
3. Time-Lapse Imaging
Previously, we have shown that genetic deletion of Bcl11a by in utero electroporation impairs radial migration of late-born upper-layer projection neurons10. Electroporation of a DNA plasmid vector containing Cre-IRES-GFP efficiently deleted Bcl11a in conditional Bcl11aflox/flox brains11. When we analyzed E14.5 electroporated brains three days after the electroporation, most control neurons had migrated into the CP, whereas many Bcl11a mutant neurons were stalled along the migratory route in the IZ and VZ/SVZ. Moreover, we found an increase in the number of multipolar cells at the expense of bipolar cells specifically in the IZ upon Bcl11a deletion suggesting defects in polarization10.
To directly and dynamically analyze migratory behavior of Bcl11a mutant neurons we used time-lapse confocal imaging of migrating neurons in organotypic slice culture prepared from electroporated brains. Overview time-lapse series using a 10X objective with a numerical aperture of 0.4 confirmed our results, that Bcl11a mutant projection neurons have defects in radial migration. Within 36 h many control neurons had migrated into the CP, whereas only few Bcl11a mutant neurons had left the IZ and migrated into the CP. Interestingly, it seemed that many Bcl11a mutant neurons did not migrate directly towards the pial surface of the brain, but slowed down migration and turned tangentially or even back towards the ventricle (Movie 1). To further analyze these findings we generated time-lapse series at a higher magnification using a 40x objective with a numerical aperture of 0.6. Our data show that Bcl11a mutant neurons failed to efficiently polarize and to continue radially oriented migration into the CP. Within 12 h, many Bcl11a mutant neurons failed to switch from a multipolar to a bipolar morphology and instead projected and retracted many processes into the surrounding environment (Movie 2, Figure 1A).
Furthermore, we traced the migration paths of individual neurons in different time-lapse series and used these to calculate specific parameters of migrating neurons. We found that Bcl11a mutant neurons repetitively undergo phases of several hour duration with reduced migration speed and random-like orientation changes (Movie 3; Figure 1B, red arrowheads). In particular, the speed profile of Bcl11a mutant neurons was shifted from higher speed (25 µm/h) towards lower speed (5 µm/h) in comparison to control neurons (Figure 1C). In line with this, the overall migration speed of Bcl11a mutant neurons was significantly reduced from 10.34 ± 0.34 µm/h in controls to 6 ± 0.54 µm/h (p = 2.4889E-05) (Figure 1D). Finally, the deviation from directed migration towards the pial surface of the brain was significantly increased from 17.15 ± 2.13° in control to 40.16 ± 4.42° in Bcl11a mutant neurons (p = 0.0002) (Figure 1E). Together these results demonstrate that time-lapse confocal imaging of GFP electroporated neurons in organotypic slice culture is a valuable method to study molecular mechanisms controlling the process of neuronal migration.
Movie 1: Migration of GFP Labeled Control in Comparison to Bcl11a Mutant Neurons in Cortical Slices. Bcl11aflox/flox brains were electroporated at E14.5 with a plasmid vector containing IRES-GFP (A) or Cre-IRES-GFP (B) and slice cultures were prepared at E16.5. VZ/SVZ; ventricular/subventricular zones; IZ, intermediate zone; CP, cortical plate. Scale bar = 100 µm. The movie is comprised of 108 frames at the rate of 5 frames/s. Reprinted from Wiegreffe et al.10 with permission from Elsevier. Please click here to view this video. (Right-click to download.)
Movie 2: Polarization of a GFP Labeled Control in Comparison to Bcl11a Mutant Neurons in Cortical Slices. Bcl11aflox/flox brains were electroporated at E14.5 with a plasmid vector containing IRES-GFP (A) or Cre-IRES-GFP (B) and slice cultures were prepared at E16.5. Scale bar = 10 µm. The movie is comprised of 25 frames at the rate of 5 frames/s. Reprinted from Wiegreffe et al.10 with permission from Elsevier. Please click here to view this video. (Right-click to download.)
Movie 3: Animated Traces with 1 h Interval Resolution of Representative Control and Bcl11a Mutant Neurons. Traces of migrating neurons were obtained from time-lapse series of E16.5 slice cultures of Bcl11aflox/flox brains that were electroporated at E14.5 with a plasmid vector containing IRES-GFP (A) or Cre-IRES-GFP (B). Scale bar = 20 µm. Reprinted from Wiegreffe et al.10 with permission from Elsevier. Please click here to view this video. (Right-click to download.)
Figure 1: Migration Behavior of Bcl11a Mutant Upper-Layer Cortical Neurons.
(A) Representative images of migrating GFP positive neurons in E16.5 slice cultures from Bcl11aflox/flox brains electroporated at E14.5 with either Cre-IRES-GFP or a control vector over a total imaging period of 12 h. (B) Representative traces with 1 hour interval resolution of migrating GFP positive neurons in E16.5 slice cultures from Bcl11aflox/flox brains electroporated at E14.5 with Cre-IRES-GFP or a control vector over total imaging periods of up to 22 h. Bcl11a mutant neurons frequently undergo repetitive phases of reduced migration speed and randomly changed orientation (marked by red arrowheads). (C) Speed profiles calculated from traces of migrating neurons as shown in B. (D-E) Quantification of speed (D) and deviation angle from radial orientation (E) of migrating GFP positive neurons in E16.5 slice cultures from Bcl11aflox/flox brains electroporated at E14.5 with Cre-IRES-GFP or a control vector (n = 15). Mean ± s.e.m.; Student's t test; ***p <0.001. Scale bar = 10 μm. Reprinted from Wiegreffe et al.10 with permission from Elsevier. Please click here to view a larger version of this figure.
Radial migration is a key process in neocortex development. Mutations in genes affecting different steps of this process can cause severe cortical malformations, including lissencephaly and white matter heterotopia1,2. We recently showed that Bcl11a, which is expressed in young migrating cortical projection neurons, plays a role in radial migration. We used time-lapse confocal imaging of migrating neurons in acute cortical slices of electroporated brains to directly demonstrate that genetic deletion of Bcl11a in migrating neurons causes polarization and migration defects. Time-lapse series were used to trace migration paths of individual neurons and calculate specific parameters of migrating neurons, including speed profiles, average migration speed, and migratory direction10.
This protocol describes an important approach when studying molecular mechanisms in radial migration. By using short hairpin RNA or DNA expression plasmids, almost any gene of interest can be knocked down or overexpressed, respectively. It is a powerful approach to combine electroporation with the Cre-LoxP system. Transfection of brains of conditional mutant ("floxed") mice with Cre recombinase generates a mosaic mutant situation and allows selective analysis of single mutant neurons that are surrounded by wild-type cells. In this way, cell autonomous molecular mechanisms in migrating neurons can be investigated. Also, functional rescue experiments are easily performed. Preparing time-lapse series of electroporated brain slices allows dynamically analyzing migratory behavior of single migrating neurons, which provides much more information than can be obtained from fixed brain sections. In utero electroporation3,4 requires initial training but – once mastered – is a rapid and straightforward technique to reproducibly transfect neurons of the cerebral cortex in vivo. In the protocol described here we used in utero electroporation at E14.5, when late-born upper-layer neocortical projection neurons are born. For the study of early-born deep-layer projection neurons in utero electroporation has to be performed on earlier developmental stage (i.e. E12.5)13. In principle, the protocol may also be used to study migration of other neuronal subpopulations in the brain that can be transfected with electroporation, including migration of interneurons14 and cerebellar granule cells15.
The slice culture protocol that we describe was adapted from Polleux and Gosh12 and previously, we have used it for ex utero electroporation16,17 to study hippocampal development. Most importantly, the brain slices have to be handled with care throughout the procedure to maintain their viability. We use an inverted microscope and optical quality glass bottom dishes to image the slice culture resting on a cell culture insert. This configuration is very easy to set up and allows sterile conditions, since the objective never gets in touch with the slice culture or medium. However, long working distance objectives (>2 mm) with a sufficiently high numerical aperture (0.6 or higher) are required. Other studies have put the brain slice directly onto the glass bottom and used a collagen matrix18,19 to fix the slice in place, which makes the use of objectives with a shorter free working distance possible. However, using cell culture inserts provides easy handling, reproducible results, and allows the researcher to image the slices even 1 to 2 days after their preparation without compromising viability of the brain slice (data not shown). Another critical issue concerns damaging the slices by laser light. We have used a highly sensitive hybrid detector, which allowed us to reduce laser power to a minimum while still obtaining sufficient fluorescent signals for time-lapse imaging. Using multiphoton imaging would further reduce photodamage and would allow for a deeper tissue penetration as well as more efficient light detection as compared to conventional confocal microscopy.
Despite its usefulness to study neuronal migration, the protocol has limitations and cannot entirely preserve the situation of migrating neurons in the intact brain. Extracellular matrix, the adhesive intercellular contacts, and the vasculature within the migratory zone can dynamically influence radially migrating neurons20,21. Specifically, upper layer neurons depend on elongated radial glial processes for their migration22. For successful imaging, it is therefore important to select brain slices with GFP electroporated radial glial cells that extend their processes through the entire cortical width. 'Oblique slices', in which the radial glial scaffold has been cut off before reaching the pial surface of the brain, should be discarded from further analysis. Sometimes, cell death may occur at the air-surface of the brain slice, which restricts image acquisition to deeper region within the sample. Electroporated neurons in cultured brain slices may migrate less efficiently compared to electroporated neurons in vivo, which can be caused by insufficient recovery from preparation. This requires analyses of multiple slice cultures for both experimental and control situations, and critical interpretation of representative data sets. In some cases the insults associated with in utero electroporation may cause embryonic death or structural alterations of the brain, including enlarged ventricles, asymmetrically thinned cortex, or a glial scar formation resulting from DNA injection. In those cases, the sample should be discarded from further analysis.
While brain slices from embryonic donors survive well on membrane inserts23, analyses are restricted to early developmental events, including neuronal migration, and we have not used it for studying later events, such as dendrite development or synaptogenesis. In summary, we provide a detailed protocol to directly and dynamically study neuronal migration of electroporated neurons in slice cultures, which can be readily adapted to analyze functions of genes involved in neurodevelopmental disorders.
The authors have nothing to disclose.
We thank Jacqueline Andratschke, Elena Werle, Sachi Takenaka, and Matthias Toberer for excellent technical assistance, as well as Victor Tarabykin for helpful discussions. This work was supported by a grant of the Deutsche Forschungsgemeinschaft to S.B. (BR-2215).
isoflurane | Abbott Laboratories | 506949 | Forene |
6-well plate | Corning | 351146 | |
12-well plate | Corning | 351143 | |
non-absorbable surgical suture | Ethicon | K890H | 3/8 circle, 13 mm, taper point |
Micro Adson Forceps | Fine Science Tools | 11018-12 | serrated, length: 12 cm |
fine scissors | Fine Science Tools | 14063-09 | angled to side, length: 9 cm |
Mathieu Needle Holder | Fine Science Tools | 12510-14 | tungsten carbide, length: 14 cm |
fine tipped forceps | Fine Science Tools | 11370-40 | straight, 11 cm |
Vannas Tübingen Spring Scissors | Fine Science Tools | 15005-08 | angled up, 9.5 cm |
ring forceps | Fine Science Tools | 11103-09 | OD: 3mm, ID, 2.2 mm, length: 9 cm |
HBSS (10X) | Gibco | 14180046 | |
L-Glutamine | Gibco | 25030081 | |
Penicillin/Streptomycin | Gibco | 15140122 | |
horse serum | Gibco | 26050088 | |
BME | Gibco | 41010026 | |
borosilicate glass capillaries | Harvard Apparatus | 30-0016 | 1.0 OD x 0.58 ID x 100 L mm |
anesthsesia system | Harvard Apparaus | 72-6471 | |
anesthetizing chamber | Harvard Apparaus | 34-0460 | |
fluosorber filter canister | Harvard Apparaus | 34-0415 | |
low melting point agarose | Invitrogen | 16520100 | |
vibrating blade microtome | Leica | VT1200 S | |
fluorescence stereo microscope | Leica | M205 FA | |
stereo microscope | Leica | M125 | |
inverted fluorescence tissue culture microscope | Leica | DM IL LED | |
confocal laser scanning microscope | Leica | TCS SP5II | |
hybrid detector | Leica | HyD | |
objective, 40x/0.60 NA | Leica | 11506201 | |
microscope temperature control system | Life Imaging Services | Cube, Brick & Box | |
cell culture insert | Millipore | PICM0RG50 | |
microgrinder | Narishige | EG-45 | use 38° angle for beveling |
microinjector | Parker Hannifin | 052-0500-900 | Picospritzer III |
carprofen | Pfizer Animal Health | NDC 61106-8507 | Rimadyl |
emdedding mold | Polysciences | 18986-1 | |
endotoxin-free plasmid maxi kit | Qiagen | 12362 | |
fast green | Sigma | F7252 | |
laminin | Sigma | L2020 | |
poly-L-lysine | Sigma | P5899 | |
HEPES | Sigma | H4034 | |
D-glucose | Sigma | G6152 | |
calcium chloride | Sigma | C7902 | |
magensium sulfate | Sigma | M2643 | |
sodium bicarbonate | Sigma | S6297 | |
square wave electroporator | Sonidel | CUY21EDIT | |
tweezers with 5 mm platinum disk electrodes | Sonidel | CUY650P5 | |
micropipette puller | Sutter Instrument | P-97 | |
box filament | Sutter Instrument | FB255B | 2.5 mm x 2.5 mm |
micro-spoon spatula | VWR | 231-0191 | 185 mm x 5 mm |
glass bottom dish, 50 mm | World Precision Instruments | FD5040-100 |