We present a protocol for a modified sandwich enzyme-linked immunosorbent assay technique to quantitatively measure two components of neutrophil extracellular trap remnants, myeloperoxidase conjugated-DNA and neutrophil elastase conjugated-DNA complexes,derived from activated neutrophils.
Certain stimuli, such as microorganisms, cause neutrophils to release neutrophil extracellular traps (NETs), which are basically web-like structures composed of DNA with granule proteins, such as myeloperoxidase (MPO) and neutrophil elastase (NE), and cytoplasmic and cytoskeletal proteins. Although interest in NETs has increased recently, no sensitive, reliable assay method is available for measuring NETs in clinical settings. This article describes a modified sandwich enzyme-linked immunosorbent assay to quantitatively measure two components of circulating NETs, MPO-DNA and NE-DNA complexes, which are specific components of NETs and are released into the extracellular space as breakdown products of NETs. The assay uses specific monoclonal antibodies for MPO or NE as the capture antibodies and a DNA-specific detection antibody. MPO or NE binds to one site of the capture antibody during the initial incubation of samples containing MPO-DNA or NE-DNA complexes. This assay shows good linearity and high inter-assay and intra-assay precision. We used it in 16 patients with COVID-19 with accompanying acute respiratory distress syndrome and found that the plasma concentrations of MPO-DNA and NE-DNA were significantly higher than in the plasma obtained from healthy controls. This detection assay is a reliable, highly sensitive, and useful method for investigating the characteristics of NETs in human plasma and culture supernatants.
This article outlines a method to quantify neutrophil extracellular trap (NET) formation in biological fluids by using sandwich enzyme-linked immunosorbent assay (ELISA) to detect complexes of myeloperoxidase (MPO) and neutrophil elastase (NE) with DNA1,2. NETs are composed of a DNA backbone decorated with antimicrobial proteases originating from neutrophil granules3,4. Both MPO-DNA and NE-DNA complexes are important and specific components of NETs and are released into the extracellular space as breakdown products of NETs3,4.
Besides their important physiological role in antimicrobial defense3, NETs also have various pathological effects4,5, including the promotion of thrombogenesis6 and the worsening of sepsis7. Accordingly, NETs have been gaining attention recently. Nevertheless, the in vivo quantification of NETs has proven challenging because of the lack of a sensitive, reliable quantitative assay method.
A few methods are available, including the direct measurement of NETs by fluorescence microscopy8,9 and flow cytometry10 and the indirect measurement of circulating cell-free DNA, nucleosomes, and citrullinated histone H3, but each method has its own advantages and limitations11. Although the immunofluorescence microscopic method is specific to NETs and clearly shows the localization and degree of NET formation, samples are limited to biopsy tissue and secreted materials. Moreover, this method needs to be performed by skilled researchers and requires a long time for results to be obtained. Measuring circulating levels of NET-related components by flow cytometry is easy and provides results quickly; however, the method is not specific to NETs12.
We13 and others1,2 have developed a highly sensitive and reliable assay to measure the circulating NET components, MPO-conjugated or NE-conjugated DNA, in human plasma with a modified ELISA technique that uses specific antibodies for MPO or NE as the capture antibodies and a DNA-specific detection antibody. This assay can also be used ex vivo to identify NET components in cell culture supernatants released by activated neutrophils in response to phorbol 12-myristate 13-acetate (PMA) stimulation.
This study was conducted in conformity with the Declaration of Helsinki and was approved by the institutional review boards of Aichi Medical University (2017-H341, 2019-H137). Written informed consent was obtained from each participant.
1. Reagent preparation
NOTE: To perform the sandwich ELISA assay, the reagents are prepared as described below.
2. Sample collection and storage
3. Assay method
NOTE: The steps for performing the assay are described in detail below.
4. Statistics
This method used a sandwich ELISA with anti-MPO, anti-NE, and anti-DNA monoclonal antibodies to measure MPO-associated and NE-associated DNA (Figure 1). In this method, the wells of a microtiter plate were coated with an MPO-specific or NE-specific monoclonal antibody to capture DNA-associated MPO and DNA-associated NE, as well as non-DNA-associated MPO and NE. To calculate the intra-assay coefficient of variability (CV), duplicate measurements were performed within the same plate for 30 samples collected from patients with COVID-19 and healthy controls, and the %CV was calculated as the mean of the duplicate measurements; to calculate the inter-assay CV (i.e., the plate-to-plate consistency), two types of samples from patients with COVID-19 and healthy controls were measured in quadruplicate on 10 different plates; to demonstrate the specificity of this assay, various concentrations of MPO-DNA and NE-DNA complexes were assayed by using plates coated with iso-type control antibodies instead of specific monoclonal antibodies against MPO and NE; and to calculate the sensitivity and linearity of the assay, a serially diluted NET-standard made by stimulating isolated human neutrophils with PMA and mild DNase digestion was assayed, and the correlation coefficient and limit of detection (LOD) were calculated.
The calibration curves for MPO-DNA and NE-DNA drawn from a serially diluted NET-standard are shown in Figure 2. Reliable standard curves for MPO-DNA and NE-DNA (R2 = 0.958 and 0.963, respectively) are obtained when the absorbance values do not exceed concentrations of 0.93 and 0.90, respectively. The LOD values calculated from the SD and the slope of the calibration curve were 0.132% and 0.126% for MPO-DNA and NE-DNA (%NET standard), respectively.
The highest OD was obtained when 0.6 µg/mL DNase I was applied (Figure 3). Therefore, the DNA digestion was limited to adding a 0.6 µg/mL reaction mixture of DNase I for 15 min at room temperature. When the plates were coated with the iso-type control antibody instead of the specific monoclonal antibody against MPO, very low OD values (<0.09 absorbance units [AU]) were detected at various concentrations of DNase I.
To calculate the intra-assay coefficient of variability (CV) for MPO-DNA and NE-DNA, duplicate measurements were performed in 30 samples from patients with COVID-19 and healthy controls in the same plate; the %CV was calculated by using the duplicate mean. The intra-assay CVs for MPO-DNA and NE-DNA were 1.871 and 0.987, respectively, in healthy controls and 2.532 and 2.010, respectively, in COVID-19 patients (Table 1). The mean intra-assay CVs of MPO-DNA and NE-DNA were 2.202 ± 0.467 and 1.497 ± 0.723, respectively (mean ± SD) (Table 1).
To calculate the inter-assay CV for MPO-DNA and NE-DNA, two types of samples collected from patients with COVID-19 and healthy controls were measured in quadruplicate on 10 different plates to monitor the plate-to-plate consistency. The mean inter-assay CVs of MPO-DNA and NE-DNA were 6.524 ± 2.672 and 4.389 ± 0.923, respectively (mean ± SD) (Table 2).
To evaluate the specificity of the capture antibodies to MPO-DNA and NE-DNA complexes, we assayed various concentrations of MPO-DNA and NE-DNA complexes by using plates coated with iso-type control antibodies instead of specific monoclonal antibodies against MPO and NE. Table 3 shows that the iso-type control antibodies reacted little with the MPO-DNA and NE-DNA complexes at the various concentrations (0.035 AU to 0.078 AU and −0.007 AU to 0.096 AU, respectively).
The levels of MPO-DNA and NE-DNA in the supernatant of DNase-digested PMA-stimulated neutrophils were defined as 100% NET-standard, and the plasma sample data were expressed as %NET-standard. The levels of MPO-DNA (%NET-standard) were significantly higher in the plasma from patients with COVID-19 (n = 16; 29.1% [IQR, 25.8, 41.5]) than in the plasma from healthy controls (n = 10; 13.4% [IQR, 12.4, 14.8]), as were the levels of NE-DNA (%NET-standard) (46.4% [IQR, 32.7, 53.7] vs. 12.1% [IQR, 9.9, 14.7], respectively, P < 0.01; Figure 4).
Figure 1: Basic stages of a sandwich enzyme-linked immunosorbent assay method for measuring myeloperoxidase-DNA or neutrophil elastase-DNA in samples. (A) The wells are coated with an anti-myeloperoxidase (MPO) or anti-neutrophil elastase (NE) capture antibody. (B) The remaining protein binding sites are blocked by blocking agents. (C) Samples containing NE-conjugated and MPO-conjugated DNA are added. (D) Limited DNase digestion is performed, and the sample is incubated in the wells to bind with the capture antibody. (E) A secondary peroxidase-labeled anti-DNA antibody is added. (F) Unbound secondary peroxidase-labeled anti-DNA antibody is removed. (G) The substrate 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) is added, and the color development is monitored. Abbreviations: ABTS = 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid); MPO = myeloperoxidase; NE = neutrophil elastase Please click here to view a larger version of this figure.
Figure 2: Linearity of the relationships between the intensity values and the various dilutions of the neutrophil extracellular trap standard. The supernatant of DNase-digested phorbol 12-myristate 13-acetate-stimulated neutrophils was serially diluted, and the levels of myeloperoxidase-DNA and neutrophil elastase-DNA were assayed to generate a calibration curve. The absorbance units (AU) obtained from the undiluted neutrophil extracellular trap standard (NET-standard) were assigned as 100%NET, and plotting the intensity value at 405 nm against the %NET-standard revealed a linear relationship. Abbreviations: MPO = myeloperoxidase; NE = neutrophil elastase; NET = neutrophil extracellular trap Please click here to view a larger version of this figure.
Figure 3: Dose-response of DNase I in neutrophil extracellular trap-DNA digestion. The sample was inserted into myeloperoxidase-coated wells. Then, DNase I (0 µg/mL, 0.3 µg/mL, 0.6 µg/mL, or 0.9 µg/mL) was added. After 15 min of digestion, the enzyme activity was stopped, and the remaining steps of the sandwich enzyme-linked immunosorbent assay were performed accordingly. The data are shown as the mean ± SD. N = 12. Please click here to view a larger version of this figure.
Figure 4: Plasma levels of myeloperoxidase-DNA and neutrophil elastase-DNA complexes in patients with COVID-19. The data are expressed as percentages of neutrophil extracellular trap standard (NET-standard) content and presented as medians and interquartile ranges. Patients with COVID-19, n = 16; healthy controls, n = 10. ** P < 0.01 versus healthy controls. Abbreviations: HC = healthy controls; NET = neutrophil extracellular trap. Please click here to view a larger version of this figure.
Table 1: Intra-assay coefficient of variability. Thirty samples were measured in duplicate to monitor individual coefficients of variability and, thus, determine the intra-assay coefficient of variability. Abbreviations: AU = absorbance units; CV = coefficients of variability Please click here to download this Table.
Table 2: Inter-assay coefficient of variability. The samples were measured in quadruplicate on 10 different plates to monitor plate-to-plate variation and, thus, determine the inter-assay coefficient of variability. Abbreviations: AU = absorbance units; CV = coefficient of variability. Please click here to download this Table.
Table 3: Specificity test for capture antibodies. The plates were coated with iso-type control antibodies for anti-myeloperoxidase (MPO) and anti-neutrophil elastase (NE) to evaluate the specificity of the capture antibodies for the MPO-DNA and NE-DNA complexes. Abbreviations: AU = absorbance units; MPO = myeloperoxidase; NE = neutrophil elastase Please click here to download this Table.
We have described a sandwich ELISA method in which MPO or NE binds to one site of the capture antibody during the initial incubation of samples containing MPO-DNA or NE-DNA complexes. After washing, the "sandwich" is completed by incubating the samples with a peroxidase-associated anti-DNA monoclonal antibody. After the removal of unbound secondary antibody, the bound peroxidase conjugate is detected by the addition of a chromogenic ABTS peroxidase substrate, which yields a soluble end-product that can be read spectrophotometrically at 405 nm. The good linearity and high inter-assay and intra-assay precision indicate that the ELISA assay described in this paper and others1,2 is reliable and feasible for clinical application. Furthermore, when the supernatant of DNase-treated PMA-stimulated neutrophils is assigned as a maximal signal for the NET-standard, this ELISA assay can be used as a semi-quantitative method1,14,15.
The long chromatin threads of NETs are decorated with MPO and NE proteins. To increase the binding between the capture antibody and the MPO-DNA or NE-DNA complexes, the threads are cut into shorter pieces by limited DNA digestion with the enzyme DNase; the addition of a DNase concentration that is too high could lead to excessive digestion of the DNA and, thus, a decrease in the absorbance. The results of a preliminary experiment (see Figure 3) showed that an appropriate amount of DNase addition is necessary to loosen the remnants derived from NETs. The experiments that used iso-type control antibodies instead of specific capture antibodies showed that the capture antibodies used in this assay were specific for MPO-DNA and NE-DNA complexes.
The early stage of NET formation is characterized by decondensed chromatin and the preservation of the intensity of the plasma membrane9,16,17. Neutrophils with a condensed nucleus have been identified as neutrophils that are undergoing NET formation and can be quantified by flow cytometry10. Although flow cytometry can analyze a large number of images from cells in a short time, it cannot be used to evaluate the later stages of NET formation after cell membrane rupture and the extrusion of chromatin. Citrullinated histones H3, which are known to be NET-specific markers, can be detected by western blotting18 and ELISA19; however, these methods are only specific to PAD4-related NET formation and cannot be used to assess PAD4-independent NETs20.
The finding that the levels of serum NET remnants were higher in patients with COVID-19 than in healthy controls agrees with previous reports21,22. This finding suggests that neutrophil activation, including NET formation, may play an important role in the pathogenesis of COVID-19.
This assay has a limitation. Recent reports have shown that immune-related genes, including MPO and ELANE, which encode MPO and NE, respectively, are highly expressed under uncontrolled inflammatory conditions23 and are positively correlated with disease severity and mortality24. As MPO and NE are involved in the formation of NETs independent of those enzymatic activities15, increased protein levels of NE and MPO in neutrophils may affect the results of this assay.
We conclude that this sandwich ELISA method directly measures extracellular DNA with granule proteins, including NE and MPO, which are specific for NET formation. This detection assay is a reliable, highly sensitive, and useful method for investigating the characteristics of NETs in human samples and culture supernatants.
The authors have nothing to disclose.
The authors thank Dr. Huq Muhammad Aminul for providing assistance in reviewing the manuscript.
1-Step Polymorphs | Accurate Chemical and Scientific Corporation | AN221725 | Isolation of PMN's from human blood. |
96-well microtiter plate | Thermo Fisher Scientific | 467466 | flat bottom |
ABTS buffer solution | Sigma-Aldrich Merck | 11 204 530 001 | Contains sodium perborate, citric acid, and disodium hydrogen phosphate. |
ABTS tablets | Sigma-Aldrich Merck | 11 204 521 001 | Each tablet contains 5 mg ABTS substrate and 60 mg vehicle substances. |
Adhesive plastic cover, Axygen | Thermo Fisher Scientific | 14222348 | |
Anti-MPO antibody | Sigma-Aldrich Merck | 07-496-I | Store at 2-8 °C. stable for 1 year. Host species is rabbit. |
Anti-NE antibody, clone AHN-10 | Sigma-Aldrich Merck | MABS461 | Store at 2-8 °C. stable for 1 year. Host species is mouse. |
Bovine serum albumin | Biomedical Science | BR-220700081 | Albumin from bovine fraction V. Store at 2–8 °C. stable for 2 year. |
DNase I | New England BioLabs | M0303M | Store at -20 °C |
IgG, rabbit, Isotype Control | GENETEX, Inc. | GTX35035 | Store as concentrated solution at 2–8 °C. |
IgG1, mouse Isotype Control, clone Ci4 | Merck | MABC002 | Store as concentrated solution at 2–8 °C. |
Lithium heparin blood collection tube | Becton Dickinson and Company | ||
Microplate mixer | As one corporation | NS-P | |
Microplate Reader | Molecular Devices | SpectraMax 190 | Any microplate plate reader capable of reading wavelengths from 405–490 nm can use. |
Microplate reader application | Molecular Devices | SoftMax pro | |
Peroxidase-conjugated anti-DNA antibody, Cell death Detection ELISA | Roche Diagnostics | 1154467500 | bottle 2. Store at 2–8 °C. stable for 1 year. |
Phorbol 12-myristate 13-acetate | Sigma-Aldrich Merck | P8139 | Activation of PMN's from human blood. |
Phosphate buffered solution | Takara Bio | T9181 | Store at room temperature. Stable for 6 months. |
SigmaPlot v14.5 | Systat Software Inc. San Jose, CA, USA | ||
Sodium azide | Fujifilm Wako Chemicals | 190-14901 | Store at room temperature. |
t-Octylphenoxypolyethoxyethanol, Polyethylene glycol tert-octylphenyl ether | Fujifilm Wako Chemicals | 9002-93-1 | Store at room temperature. |