Dissolved organic matter provides an important source of energy and nutrients to stream ecosystems. Here we demonstrate a field-based method to manipulate the ambient pool of dissolved organic matter in situ through easily replicable nutrient pulses.
Dissolved organic matter (DOM) is a highly diverse mixture of molecules providing one of the largest sources of energy and nutrients to stream ecosystems. Yet the in situ study of DOM is difficult as the molecular complexity of the DOM pool cannot be easily reproduced for experimental purposes. Nutrient additions to streams however, have been shown to repeatedly alter the in situ and ambient DOM pool. Here we demonstrate an easily replicable field-based method for manipulating the ambient pool of DOM at the ecosystem scale. During nutrient pulse experiments changes in the concentration of both dissolved organic carbon and dissolved organic nitrogen can be examined across a wide-range of nutrient concentrations. This method allows researchers to examine the controls on the DOM pool and make inferences regarding the role and function that certain fractions of the DOM pool play within ecosystems. We advocate the use of this method as a technique to help develop a deeper understanding of DOM biogeochemistry and how it interacts with nutrients. With further development this method may help elucidate the dynamics of DOM in other ecosystems.
Dissolved organic matter (DOM) provides an important energy and nutrient source to freshwater ecosystems and is defined as organic matter that passes through a 0.7 µm filter. Within aquatic ecosystems, DOM can also influence light attenuation and metal complexation. DOM is a highly diverse and heterogeneous mixture of organic compounds with various functional groups, as well as essential nutrients such as nitrogen (N) and phosphorous (P). While the term "DOM" describes the entire pool including its C, N and P components, its concentration is measured as dissolved organic carbon (DOC). The inherent molecular complexity of the DOM pool however, creates challenges to its study. For example, there is no direct way to measure the fraction of the total DOM pool comprised of organic nutrients such as dissolved organic nitrogen (DON) and dissolved organic phosphorus (DOP). Instead, the concentration of organic nutrients must be determined by difference (e.g. [DON] = [total dissolved nitrogen] – [dissolved inorganic nitrogen]).
Adding a realistic DOM amendment to a stream is difficult due to the diversity of the ambient DOM pool. Previous studies have added single carbon sources (e.g. glucose, urea1) or a particular source such as leaf litter leachate2 to manipulate concentrations in the field. However, these sources are not particularly representative of the ambient DOM pool. Trying to refine or concentrate ambient DOM for subsequent experimentation is also wrought with difficulties including the loss of certain fractions (e.g. highly labile components) during processing. As a result, it is difficult to understand the controls on the ambient DOM pool as we currently do not possess any method to directly manipulate the ambient DOM pool. However, since the biogeochemistry of DOM is linked to nutrients commonly found in the environment (e.g. nitrate [NO3–]3), we can add other solutes to stream ecosystems and measure the response of the DOM pool to these manipulations. By examining how the DOM pool responds to a wide range of experimentally imposed nutrient concentrations we hope to gain better insight into how DOM responds to fluctuating environmental conditions.
One method commonly used in stream biogeochemistry is the nutrient addition method. Nutrient addition experiments have traditionally been used to understand uptake kinetics or the fate of the added solute4,5,6,7. Nutrient additions can be short-term on the hr6 to day scale4, or longer-term manipulations over the course of multiple years8. Nutrient additions can also include isotopically labelled nutrients (e.g. 15N-NO3–) to trace added nutrient through biogeochemical reactions. However, isotope-based studies are often expensive and require challenging analyses (e.g. digestions) of the multiple benthic compartments where isotopically-labeled nutrients may be retained. Recent experimentation has revealed the utility of short-term nutrient pulses to elucidate the controls on non-added and ambient solutes such as DOM9,10, revealing a new way by which to examine real-time in situ biogeochemical reactions. Here we describe and demonstrate the key methodological steps to conducting short-term nutrient pulses with the objective of understanding the coupled biogeochemistry of C and N and specifically the controls on the highly diverse DOM pool. This easily reproducible method involves adding a nutrient pulse to an experimental stream reach and measuring changes in the concentration of both the manipulated solute and the response variable of interest (e.g. DOC, DON, DOP). By directly manipulating nutrient concentrations in situ we are able to indirectly alter the DOM pool and examine how DOM concentration changes across a dynamic range of nutrient concentrations10.
1. Identifying and Characterizing the Ideal Experimental Stream Reach
Figure 1: Example of Downstream Sampling Site. An ideal sampling site is where the majority of flow is constricted and easily accessible without disturbance of the stream channel and benthos. Here a fallen piece of wood debris has created this sampling point in a small first-order headwater stream. Please click here to view a larger version of this figure.
2. Preparation for Experiment
3. Day of Set Up
4. Adding Solutes
5. Field Sampling
Figure 2: Example Schematic of Solute Breakthrough Curve (BTC). A BTC represents changes in solute concentration over time and can be used to explain the transit and biogeochemical cycling of a tracer in a stream. Grab samples should be taken across the BTC with a frequency that gives equal representation to both the ascending and descending limbs of the BTC. Please click here to view a larger version of this figure.
Bottle # | Specific Conductance | Time | Notes |
1 | hr:min:sec | e.g. background (downstream) | |
2 | e.g. background (downstream) | ||
3 | |||
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5 | e.g. sample at peak conductance | ||
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Highest Bottle # |
Table 1PField book: Example Page from Lab Book and Required Information
6. Preparation for Laboratory Analysis
7. Data Analysis
Figure 3: Example Results from Nitrate (NO3–) Additions with Dissolved Organic Nitrogen (DON) as the Response Variable. Analyses are linear regressions. Asterisks represent statistical significance at α = 0.05. Note the dynamic range in NO3– concentration that was achieved with the nutrient pulse method. Different panels represent different experiments across months and sites. Site acronyms refer to the three experimental streams10. Positive correlations are interpreted to reflect DON's role as a nutrient source while negative correlations are interpreted to reflect DON's role as an energy source. Experiments that resulted in no significant relationship are interpreted as either to reflect a non-responsive DON pool (i.e. highly recalcitrant) or that nutrient-based processes and energy-based process are off-setting. Please see Wymore et al.10 for additional discussion of results. Please click here to view a larger version of this figure.
Figure 4: Example Results from Nitrate (NO3–) Additions with Dissolved Organic Carbon (DOC) as the Response Variable. Analyses are linear regressions. Asterisks represent statistical significance at α = 0.05. Different panels represent different experiments across months and sites. Site acronyms refer to the three experimental streams10. Across the majority of experiments no significant changes in the ambient DOC pool were observed. Negative results can be revealing about coupled biogeochemical processes. Please see Wymore et al.10 for additional discussion of results. Please click here to view a larger version of this figure.
Through the direct in situ manipulation of NO3–, we were able to indirectly alter concentrations of the DOM pool providing insight into the biogeochemical controls on the ambient DOM pool. Figure 3 shows results from a study that examined the interaction between NO3– and DON10. Although the exact magnitude of solute increase varied across experiments (due to variation in background solute concentration) sufficiently large gradients of NO3– were created via the nutrient addition approach. From this set of experiments, across three watersheds in New Hampshire, USA, we are able to make inferences about the ecological role of DON in headwater streams. As an organic nutrient, DON may serve as either an energy source (carbon) or as a nitrogen source. In these low NO3– streams, we interpreted the increase in DON concentration to reflect its utilization as a nutrient source. By providing the microbial communities with a highly available form of N as NO3–, the community shifted from DON to this newly available form. This has previously been referred to as the DON release hypothesis15. In contrast, the negative correlations we observed during these nitrate manipulations are interpreted to reflect DON utilization as an energy source. This heterotrophic process has been termed the passive-carbon vehicle hypothesis1,15. The highly variable response of DON throughout the growing season suggests strong seasonality in how DON responds to added nutrients. These data provide some of the first field-based experimental results regarding the ecological role that DON serves within stream ecosystems.
Negative results from these ecosystem manipulations are also revealing with respect to controls on biogeochemical processes. For example, Figure 4 shows no measurable response in the ambient DOC pool to the addition of NO3–. This suggests that the ambient pool of DOC is highly recalcitrant (i.e. not bioreactive). When nutrient pulses are repeatedly performed over the growing season for example, we can make inferences and conclusions about how and when the different fractions of the DOM pool are used by aquatic microbial communities. Through these manipulative ecosystem-scale experiments we were able to discern interactions between certain fractions of the DOM pool across a dynamic range of the added nutrient. These results in particular suggest that the N-rich fraction and C-rich fraction of the DOM pool cycle independently and may have their own unique set of ecological and biogeochemical controls16,17. By using this nutrient addition method we have been able to provide manipulative field-based data which provides strong evidence and support to patterns of DON lability that had only previously been observed in laboratory incubations18,19.
The objective of the nutrient pulse method, as presented here, is to characterize and quantify the response of the highly diverse pool of ambient stream water DOM across a dynamic range of an added inorganic nutrient. If the added solute sufficiently increases the concentration of the reactive solute, a large inferential space can be created to understand how the biogeochemical cycling of DOM is linked to nutrient concentrations. This nutrient pulse approach is ideal as it involves none of the machinery associated with plateau-style addition (e.g. peristaltic pump) and does not involve expensive isotopic techniques. These manipulations are easily reproducible and multiple experiments can be conducted during a single day. We do recommend however, that if replicating experiments on the same day within a single stream reach, that additions are separated by several hours to allow for sufficient flushing of residual solutes.
In these ecosystem manipulations we are able to measure changes in the concentration of the ambient pool of DOM in response to the addition of nutrients. However, with this approach it is not possible to comment on which component of the DOM pool actually decreased or increased beyond changes in the concentration of DON and DOC. We cannot discern if it is a certain form of DON for example, that is preferentially consumed with the addition of NO3–. Changes could be due to a highly abundant and available forms of DON (e.g. amino acids) that were altered enough to change the overall concentration. However, this field-based approach could be easily paired with high-resolution analytical chemistry methods (e.g. fluorescence spectroscopy, Fourier transform ion cyclotron resonance mass spectroscopy) to determine what components or classes of molecules are directly responding to the experimental manipulation.
In addition to DOM chemistry, other biological and environmental factors may influence the response of DOM to the added nutrient. To understand this multifactor interaction other field data can be collected to examine other important variables. Temporal changes in the direction of the DON response to nitrate (Figure 3A-3F) may reflect autotrophic vs. heterotrophic dominated processes. For example, the positive relationship in Figure 3A, may reflect the activity of autotrophic organisms. It is likely that in May there is still adequate photosynthetically active radiation reaching the stream (prior to riparian canopy closure) and the observed pattern reflects these organisms shifting from DON to NO3– as their source of nitrogen, which results in an increase in DON concentration. The negative relationship observed later in the season (e.g. Figure 3E), likely represents the activity of heterotrophic microorganisms who are mining DON for its energy content. To test this type of biologically-based hypothesis, future research could incorporate concurrent measurements of autotrophic standing stock, microbial activity levels or enzymes concentrations, for example. Examining DOM-nitrate interactions across other environmental gradients, including dissolved oxygen and temperature, could help to elucidate the role of other physio-chemical parameters in driving the coupled biogeochemistry of DOM and nitrate.
The selection of low NO3– streams is essential for the success of these experiments and to retain the ability to measure changes in the DON pool. Studies examining the interaction between NO3– and DON for example, should occur in streams where NO3– makes up less than 50% of the TDN pool. The precision of measuring DON via subtraction is greatly reduced when NO3– contributes too large a fraction of the TDN pool since there is a multiplicative error term surrounding DON measurements that results from the analysis of TDN, NO3– and NH4+. Such sub-optimal conditions can result in negative DON concentrations. Thus this technique may be limited in systems which are heavily impaired by NO3– such as estuaries.
Although larger streams and rivers present their own set of challenges, this method may be applicable to higher-order systems. For example, Tank et al.5 performed a nutrient pulse experiment in the 7th-order Upper Snake River in Wyoming to examine the uptake kinetics of dissolved inorganic N. There may be ways to perform similar experiments in either lakes, soils or groundwater. However, such experiments are difficult due to the challenges associated with exposing a system to a gradient of nutrient concentrations or containing experimental units in ways that minimize disruption and experimental artefacts. This is one of the advantages of using stream ecosystems for these types of manipulative experiments. Nonetheless, the development of similar methods for other ecosystems, especially systems impaired by excessive N loading (e.g. estuaries), could have important management implications as we begin to understand the ways in which different forms of N drive eutrophication and toxic algal blooms in coastal waters.
The authors have nothing to disclose.
The authors acknowledge the Water Quality Analysis Laboratory at the University of New Hampshire for assistance with sample analysis. The authors also thank two anonymous reviewers whose comments have helped to improve the manuscript. This work is funded by the National Science Foundation (DEB-1556603). Partial funding was also provided by the EPSCoR Ecosystems and Society Project (NSF EPS-1101245), New Hampshire Agricultural Experiment Station (Scientific Contribution #2662, USDA National Institute of Food and Agriculture (McIntire-Stennis) Project (1006760), the University of New Hampshire Graduate School, and the New Hampshire Water Resources Research Center.
Sodium Nitrate | Any | Any | |
Sodium Chloride | Any | Any | Store purchased table salt can be used as well, however, it does contain trace levels of impurities |
Whatman GFF glass-fiber filters | Any | Any | |
BD Filtering Syringe | Any | Any | |
EMD Millipore Swinnex Filter Holders | Any | Any | |
Syringe stop-cock | Any | Any | |
YSI Multi-parameter probe | Yellow Springs International | 556-01 | |
Wide mouth HDPE 125 ml bottles | Any | Any | |
60 ml HDPE bottles | Any | Any | |
20 L bucket | Any | Any | |
Field measuring tape | Any | Any | |
Lab labeling tape | Any | Any | |
Stir stick | Any | Any | |
Cooler | Any | Any | |
Sharpie pen | Any | Any | |
Field notebook | Any | Any | |
Tweezers | Any | Any | |
Zip-lock bags | Any | Any |