The goal of this protocol is to manufacture pathogen-specific clinical-grade T cells using a bench-top, automated, second generation cell enrichment device that incorporates a closed cytokine capture system and does not require dedicated staff or use of a GMP facility. The cytomegalovirus pp65-specific-T cells generated can be directly administered to patients.
The adoptive transfer of pathogen-specific T cells can be used to prevent and treat opportunistic infections such as cytomegalovirus (CMV) infection occurring after allogeneic hematopoietic stem-cell transplantation. Viral-specific T cells from allogeneic donors, including third party donors, can be propagated ex vivo in compliance with current good manufacturing practice (cGMP), employing repeated rounds of antigen-driven stimulation to selectively propagate desired T cells. The identification and isolation of antigen-specific T cells can also be undertaken based upon the cytokine capture system of T cells that have been activated to secrete gamma-interferon (IFN-γ). However, widespread human application of the cytokine capture system (CCS) to help restore immunity has been limited as the production process is time-consuming and requires a skilled operator. The development of a second-generation cell enrichment device such as CliniMACS Prodigy now enables investigators to generate viral-specific T cells using an automated, less labor-intensive system. This device separates magnetically labeled cells from unlabeled cells using magnetic activated cell sorting technology to generate clinical-grade products, is engineered as a closed system and can be accessed and operated on the benchtop. We demonstrate the operation of this new automated cell enrichment device to manufacture CMV pp65-specific T cells obtained from a steady-state apheresis product obtained from a CMV seropositive donor. These isolated T cells can then be directly infused into a patient under institutional and federal regulatory supervision. All the bio-processing steps including removal of red blood cells, stimulation of T cells, separation of antigen-specific T cells, purification, and washing are fully automated. Devices such as this raise the possibility that T cells for human application can be manufactured outside of dedicated good manufacturing practice (GMP) facilities and instead be produced in blood banking facilities where staff can supervise automated protocols to produce multiple products.
Hematopoietic stem-cell transplantation (HSCT) 1 can be combined with adoptive T-cell therapy to improve graft-versus-tumor effect and to provide immunity to opportunistic infections2. Generation of antigen-specific donor-derived T cells for infusion has historically required skilled personnel and use of specialized facilities that are GMP-compliant. The delivery of such T cells has resulted in resolution of opportunistic infections3 as well as treating the underlying malignancy4. Recently, investigators have demonstrated that the adoptive transfer of only few thousand virus-specific T cells (~ 1 x 104 – 2.5 x 105 cells/kg recipient body weight) can successfully treat opportunistic CMV infections after allogeneic HSCT5-9. A limited number of GMP facilities with associated skilled manufacturing requirements and the high cost associated with cell production has, however, restricted patient access to promising T-cell therapies10. One approach to isolating antigen-specific T cells is based on the CCS using a bi-specific reagent to recognize CD45 and IFN-γ. As is shown, this methodology can be used to generate clinical-grade CMV-specific T cells employing an automated cell enrichment CCS device (Figure 1B).
CMV-specific T cells are generated by incubating overlapping peptides from CMV pp65 antigen with leukapheresis total nuclear cells (TNC) from CMV-seropositive donors. These peptides, displayed in the context of human leukocyte antigen (HLA), activate the CMV pp65-specific T cells within the TNC to secrete IFN-γ. These T cells can then be “captured” and magnetically separated. The operation of the first-generation cell enrichment device (Figure 1A) required personnel skilled in cell culture under GMP conditions, and coordination of staff to undertake the multiple steps necessary to generate a “captured” product.
The procedure typically required 10 to 12 hr of continuous operation, and therefore personnel likely need to work over two shifts in the GMP facility. These constraints are now obviated by the implementation of a second-generation device (shown in Figure 1B). This device undertakes magnetic enrichment, similar to the first generation device, but automates other aspects of the CCS in an unbreached approach. This significantly reduces the burden on the GMP team as most of the steps can be accomplished unattended by staff. Furthermore, since the device operates as a closed system, the antigen-specific T cells can be captured and processed on the benchtop except the steps involved in leukapheresis isolation and preparation of materials before starting the instrument. Details of the complete instrumentation and functionality of this second-generation cell enrichment device have been published11.
Here, we describe the steps to enrich CMV pp65-specific T cells from a steady-state apheresis product using the automated cell enrichment CCS system. Once isolated, these CMV-specific T cells may be immediately infused into a patient.
1. Preparation of Materials under Sterile Conditions (See Materials and Equipment Table)
2. Preparation and Use of Automated Cell Enrichment System (See Materials and Equipment Table)
3. Cell Count Determination
4. Examination of the Separation Performance
NOTE: The first 6 indicated regions of the hierarchy links are the same as Figure 3, (1-6) and last 2 regions are shown in Figure 4 (6-8a).
In this study, an automated cell enrichment CCS System was used for automated production of CMV pp65-specific T cells. CMV-specific T cells were enriched from three apheresis cell products. The steady-state apheresis product was harvested over 2 hr from a CMV-seropositive donor and generated 1010 total nuclear cells (TNC). 109 TNC were then activated with CMV pp65-derived peptides (60 nmol) for 4 hr and the IFN-γ secreting T cells were isolated using the CCS on the automated cell enrichment device. An operator was needed at the beginning of the experiment to load all the reagents and tubing sets. Setup of the system from the initial unpacking to starting the device took approximately 60 to 120 min. Note, the machine can then be programmed to start after the reagents and tubing sets are loaded thereby enabling the machine to operate unattended (such as overnight). The operator was needed again after 15 hr to perform characterization of the final products for cell purity and viability. After enrichment the cell supernatant was screened for mycoplasma and endotoxin presence. After validation, the processed cells can be infused directly into patients or cryopreserved for later applications.
Cell counts were determined following cell counting standard practices using the formulas given in Table 2. Each type of cell count was repeated three times and the results were expressed as mean total cell counts with standard deviation (SD). Reports were then analyzed using cell analyzer recommended software. Gating to determine viable leukocytes and lymphocytes is shown in Figure 2. The data for the cell counts are presented in Table 3. The gating strategy used to determine IFN-γ+ T cells is shown in Figure 3 and Figure 4. Before enrichment, the viability of cells was routinely > 95%. After enrichment, the viability of cells was < 50%. The absolute count of IFN-γ+ T cells was assessed before and after the enrichment process. The total number of IFN-γ+ T cells before enrichment was 1.14 x 106 ± 0.35 x 106 as derived from 109 starting TNC, and after enrichment was 3.09 x 105 ± 1.70 x 105 IFN-γ+ T cells. There were 0.16 ± 0.18% IFN-γ+ CD4+ T cells present prior to processing and this increased to 47.5 ± 34.7% after enrichment. The purity percentage of CD8+ IFN-γ+ T cells prior to capture was 0.47 ± 0.1%, and increased to 90.3 ± 1.7% after enrichment (Table 3 and 4). Sample recovery in the captured (positive) fraction was 32.9 ± 15.7% for CD4+ T cells and 31.8 ± 13.2% for CD8+ T cells based on measurement of IFN-γ+ T cells in the starting population (Table 4). These data indicate that both CD4+ and CD8+ CMV pp65-specific T cells can be harvested automatically in a manner suitable for their human application.
Figure 1. Enrichment of CMV-specific T cells using CCS system. (A) Multiple processing steps involved in the first generation cell enrichment device are handled by skilled professionals. (B) Most of the processing steps, except initial tubing setup, are automated in the second generation cell enrichment device which saves 10 – 12 hr of operator handling time in comparison with the first generation device. The enriched CMV-virus-specific T cells are characterized by the flow cytometry cell analyzer. Please click here to view a larger version of this figure.
Figure 2. Gating strategy used to determine viable T cells. The numbers 1 through 6 indicate the corresponding gating hierarchy domain in the figure. (1) Setting up time gate, (2) Removing doublet cells by plotting FSC-height against FSC-area (3) Identifying CD45+ cells, (4) Removing cell debris (5) Selecting viable leukocytes and (6) Viable lymphocytes from original population by propidium iodide staining. Please click here to view a larger version of this figure.
Figure 3. Gating strategy used to determine CD3+ T cells. Flow cytometry blot analysis of CD3+T cells before (3A) and after (3B) cell enrichment is shown here. It is crucial to determine how many CMV-specific peptide activated T cells are present in the samples before and after the enrichment process. In this figure, numbers 1 through 6 indicate the corresponding cell population either by size or stained by a specific antibody. (1) Setting up time-gate, (2) Removing doublet cells, (3) Selecting CD45+ cells, (4) Removing cell debris (5) Selecting viable leukocytes and (6) Viable CD3+ lymphocytes. Propidium Iodide staining was performed to remove dead cells. Please click here to view a larger version of this figure.
Figure 4. Gating strategy used to determine purity of IFN-γ+ T cells. Activated CMV-specific T cells are critical for controlling CMV infection, so IFN-γ+ expression on T cells were used for gating. IFN-γ+ T cells among CD4+ and CD8+ subsets (A) before enrichment and (B) after enrichment. (7/8) Percentage of CD4+ T cells and CD8+ T cells is shown in A and B. (7a) Percentage of CD4+IFN-γ+ T cells is shown in the square box (a) within the gating area and similarly for CD8+IFN-γ+ T cells in (8a). “T” represents % of cells in total population and “#” represents % of cells in gated population. Propidium iodide staining was performed to gate-out dead cells. Please click here to view a larger version of this figure.
Table 1. Volumes of the fractions used for cell staining strategy.
Table 2. Formulas used for calculation of CD4+ IFN-γ+ T cells after enrichment process. Calculation of CD8+ IFN-γ+ T cells is performed similarly.
Please click here to view a larger version of this table.
Table 3. Total cell counts in T-cell subsets before and after enrichment. Sample #1 results are shown here.
Table 4. Purity and recovery of IFN-γ+ T cell before and after enrichment process of sample #1.
Table 5. Cell sorting strategies used in the isolation of clinical grade CMV-antigen specific T cells.5
Adoptive T-cell therapy has emerged as a viable option to treat B-cell malignancies4. Its therapeutic potential is dependent on infusing the desired number of target antigen specific T cells that lack replicative senescence2. This can be achieved by sorting out a pure population of antigen specific T cells from expanded T cells in compliance with current good manufacturing practices. Two sorting procedures are widely used, namely, fluorescence-activated cell sorting (FACS) and magnetic activated cell sorting (MACS) to generate CMV antigen specific T cells as we have reviewed recently5. The advantage of using one strategy over the other is outlined in Table 5. MACS technology offers the highest cell enrichment purity in a cheaper and faster way compared to FACS technology. In addition usage of disposable columns and reagents for cell enrichment totally prevents sample to sample contamination making it easier to apply in clinical settings. The semi-automated cell enrichment device is labor intensive and time consuming so development of the automated cell enrichment device was necessary to feed clinical demand.
The automated cell enrichment CCS device is a versatile instrument for isolating clinical grade cells such as hematopoietic stem cells, somatic stem cells, as well as T cells for adoptive transfer. This automated device integrates cell processing, including fractionation of starting material, cell washing, cell separation, cell culture, and final product formation in a single-use GMP-compliant disposable unit. The closed system reduces clean-room requirements and minimizes operator involvement for maintaining GMP facilities. Automation reduces the time required for an operator to be present thereby decreasing the cost associated with these laboratory procedures.
To validate the automated cell enrichment device, as compared with the semi-automated cell enrichment device, we isolated CMV-specific T cells after incubating CMV pp65-derived peptides with an apheresis product. GMP grade CMV pp65-derived peptide cocktail (e.g. PepTivator) is a peptide pool that consists mainly of 15 mer-peptides with 11 amino acids overlap, covering the complete sequence of the pp65 protein of human cytomegalovirus. Sample recovery yield was ~ 0.3 x 106 CD3+IFN-γ+ T cells from 109 TNC. Clinical studies have demonstrated that infusing a few thousand CMV-specific T cells as prophylactic treatment for patients (~ 360 to 4,000 cells/kg body weight) undergoing HSCT resulted in protection against CMV. For example, in order to treat CMV in clinical trials using this technology, a 70 kg adult and a 30 kg child apparently require only 0.26 – 3.0 x 105 and 1 x 104 – 1.2 x 105 cells, respectively, of viral-specific T cells12-15. In general, the number of live/dead cells is comparable to the semi-automated cell enrichment device, as shown by Feuchtinger et al.13. A higher number of viable cells would also be acceptable as this would be associated with enough material for different infusions. However, more viable cells in general also means more cells other than T cells (B, NK, etc). Our data demonstrate that CMV-specific T cells generated on the automated cell enrichment system resulted in clinically-appealing numbers of CMV-specific T cells that may then be infused after allogeneic HSCT.
CMV infection can be a major problem after HSCT resulting in both increased morbidity and mortality. Furthermore, CMV infection is associated with increased costs, despite recent progress in early diagnosis and early treatment with anti-viral drugs16. The current treatment using ganciclovir and foscarnet can lead to toxicity in medically-fragile recipients of HSCT. The add-back of donor-derived CMV-specific T cells has been demonstrated to prevent and treat opportunistic infections in recipients of allogeneic HSCT9. This approach to adoptive immunotherapy has also been applied to help restore immunity to other pathogens, such as Epstein-Barr virus (EBV), adenovirus8, and Aspergillus3 by incubating mononuclear cells (MNC) with respective antigen derived clinical grade peptide cocktail reagents (Materials and equipment’s table). Recently, investigators have safely infused third-party pathogen-specific T cells that are matched with at least one HLA allele in the recipient presenting immunodominant peptide17. The automated cell enrichment CCS system may also be used to generate third-party T cells for off-the-shelf applications that will be useful when the donor is CMV-seronegative or unavailable, such as the case with donors for allogeneic umbilical cord blood transplantation.
In summary, we demonstrate the utility of an automated cell enrichment device to generate CMV-specific T cells based on automation of CCS. We believe this device has the potential to lower the threshold for clinical teams to infuse pathogen-specific, as well as tumor-specific, T cells in immunocompromised patients.
The authors have nothing to disclose.
We thank Miltenyi Biotec, Germany for providing reagents and CliniMACS Prodigy equipment for evaluation studies. We thank George T. McNamara (Pediatric department, MD Anderson Cancer Center) for proof reading the manuscript. Grant support: Cancer Center Core Grant (CA16672); RO1 (CA124782, CA120956, CA141303; CA141303); R33 (CA116127); P01 (CA148600); Burroughs Wellcome Fund; Cancer Prevention and Research Institute of Texas; CLL Global Research Foundation; Estate of Noelan L. Bibler; Gillson Longenbaugh Foundation; Harry T. Mangurian, Jr., Fund for Leukemia Immunotherapy; Institute of Personalized Cancer Therapy; Leukemia and Lymphoma Society; Lymphoma Research Foundation; MDACC’s Sister Institution Network Fund; Miller Foundation; Mr. Herb Simons; Mr. and Mrs. Joe H. Scales; Mr. Thomas Scott; National Foundation for Cancer Research; Pediatric Cancer Research Foundation; William Lawrence and Blanche Hughes Children’s Foundation.
CliniMACS PBS/EDTA Buffer 3 L bag | Miltenyi Biotec GmbH | 700-29 | |
CliniMACS Prodigy Tubing Set TS 500 | Miltenyi Biotec GmbH | 130-097-182 | |
5 L waste bag | Miltenyi Biotec GmbH | 110-004-067 | |
CliniMACS Cytokine Capture System (IFN-gamma) | Miltenyi Biotec GmbH | 279-01 | |
Albumin (Human) 25% | Grifols | 58516-5216-2 | |
Luer/Spike Interconnector | Miltenyi Biotec GmbH | 130-018-701 | |
0.9 % NaCl Solution (1 L) | Miltenyi Biotec GmbH | ||
MACS GMP PepTivator HCMV pp65 | Miltenyi Biotec GmbH | 170-076-109 | |
Water for injections | Hospira, inc, Lake Forest, IL | NDC-0409-4887-10 | |
MILLEX GV Filter Unit 0.22 μm | Millipore | SLGV033RB | |
TexMACS GMP Medium 2 L bag | Miltenyi Biotec GmbH | 170-076-306 | |
Transfer Bag, 150 mL (for cellular starting material) | Miltenyi Biotec GmbH | 130-018-301 | |
CryoMACS Freezing Bag 50 | Miltenyi Biotec GmbH | 200-074-400 | |
60 mL Syringes, sterile | BD, Laagstraat, Temse, Belgium | 309653 | |
CMV sero positive apheresis product | Key Biologics, LLC, Memphis | ||
Flow Cytometry Materials | Manufacturer | Catalog number | |
AB Serum, GemCell | Gemini Bio-Products, West Sacramento, USA | 100-512 | |
CD3-FITC | Miltenyi Biotec GmbH | 130-080-401 | |
CD4-APC | Miltenyi Biotec GmbH | 130-098-033 | |
CD8-APC-Vio770 | Miltenyi Biotec GmbH | 130-098-065 | |
CD14-PerCP | Miltenyi Biotec GmbH | 130-098-072 | |
CD20-PerCP | Miltenyi Biotec GmbH | 130-098-077 | |
CD45-VioBlue | Miltenyi Biotec GmbH | 130-098-136 | |
aIFN-γ-PE, human | Miltenyi Biotec GmbH | 130-097-940 | |
CD3-PE | Miltenyi Biotec GmbH | 130-091-374 | |
Propidium Iodide Solution (100 µg/mL) | Miltenyi Biotec GmbH | 130-093-233 | |
Equipment | Manufacturer | Catalog Number | |
CliniMACS Prodigy Device | Miltenyi Biotec GmbH | 200-075-301 | |
Software V1.0.0.RC | |||
MACSQuant Analyzer 10 | Miltenyi Biotec GmbH | 130-096-343 | |
Software 2.4 | |||
Centrifuge 5415R | Eppendorf AG | 22331 | |
Cellometer K2 | Nexelom Bioscience, Lawrence, MA | LB-001-0016 | |
Sterile tubing welder SCDIIB | Terumo Medical Corp., Elkton, MA | 7811 |