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CorrelationCalculator: A Bioinformatics Tool for Building Single Interaction Metabolites Network Based on Expression Data
Auteurs
|
Journal (Biology)
Auteur
Gayatri Iyer
1
,
Marci Brandenburg
1,2
,
Christopher Patsalis
1
,
George Michailidis
3
,
Alla Karnovsky
1
Institution
1
Department of Computational Medicine and Bioinformatics
,
University of Michigan, Ann Arbor
,
2
Taubman Health Sciences Library
,
University of Michigan, Ann Arbor
,
3
Department of Statistics
,
University of Florida
Filigree: A Bioinformatics Tool for Building Differential Network Clustering and Enrichment Analysis
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|
Journal (Biology)
Auteur
Gayatri Iyer
1
,
Marci Brandenburg
1,2
,
Christopher Patsalis
1
,
George Michailidis
3
,
Alla Karnovsky
1
Institution
1
Department of Computational Medicine and Bioinformatics
,
University of Michigan, Ann Arbor
,
2
Taubman Health Sciences Library
,
University of Michigan, Ann Arbor
,
3
Department of Statistics
,
University of Florida
CorrelationCalculator and Filigree: Tools for Data-Driven Network Analysis of Metabolomics Data
Auteurs
|
Journal (Biology)
|
Collections de méthodes
Auteur
Gayatri Iyer
1
,
Marci Brandenburg
1,2
,
Christopher Patsalis
1
,
George Michailidis
3
,
Alla Karnovsky
1
Institution
1
Department of Computational Medicine and Bioinformatics
,
University of Michigan, Ann Arbor
,
2
Taubman Health Sciences Library
,
University of Michigan, Ann Arbor
,
3
Department of Statistics
,
University of Florida
Obtaining Wildtype and Transgenic Zebrafish Larvae and WildType Whole Larvae Dissociation
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Journal (Developmental Biology)
Auteur
Naomi J. M. Kakiailatu
1
,
Laura E. Kuil
1,2
,
Eric Bindels
3
,
Joke T. M. Zink
3
,
Michael Vermeulen
3
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Veerle Melotte
4
,
Maria M. Alves
1
Institution
1
Department of Clinical Genetics
,
Erasmus University Medical Center – Sophia Children’s Hospital
,
2
Division of Psychosocial Research and Epidemiology
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the Netherlands Cancer Institute
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3
Department of Hematology
,
Erasmus Medical Center
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4
Department of Pathology, GROW-School for Oncology and Developmental Biology
,
Maastricht University Medical Center
Isolation and Dissociation of Gut from Zebrafish Larvae for FACS Enrichment of Gut Cells
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|
Journal (Developmental Biology)
Auteur
Naomi J. M. Kakiailatu
1
,
Laura E. Kuil
1,2
,
Eric Bindels
3
,
Joke T. M. Zink
3
,
Michael Vermeulen
3
,
Veerle Melotte
4
,
Maria M. Alves
1
Institution
1
Department of Clinical Genetics
,
Erasmus University Medical Center – Sophia Children’s Hospital
,
2
Division of Psychosocial Research and Epidemiology
,
the Netherlands Cancer Institute
,
3
Department of Hematology
,
Erasmus Medical Center
,
4
Department of Pathology, GROW-School for Oncology and Developmental Biology
,
Maastricht University Medical Center
FACS Enrichment of Zebrafish Gut Cell Suspension for scRNAseq
Auteurs
|
Journal (Developmental Biology)
Auteur
Naomi J. M. Kakiailatu
1
,
Laura E. Kuil
1,2
,
Eric Bindels
3
,
Joke T. M. Zink
3
,
Michael Vermeulen
3
,
Veerle Melotte
4
,
Maria M. Alves
1
Institution
1
Department of Clinical Genetics
,
Erasmus University Medical Center – Sophia Children’s Hospital
,
2
Division of Psychosocial Research and Epidemiology
,
the Netherlands Cancer Institute
,
3
Department of Hematology
,
Erasmus Medical Center
,
4
Department of Pathology, GROW-School for Oncology and Developmental Biology
,
Maastricht University Medical Center
Gut Isolation from Zebrafish Larvae for Single-cell RNA Sequencing
Auteurs
|
Journal (Developmental Biology)
|
Collections de méthodes
Auteur
Naomi J. M. Kakiailatu
1
,
Laura E. Kuil
1,2
,
Eric Bindels
3
,
Joke T. M. Zink
3
,
Michael Vermeulen
3
,
Veerle Melotte
4
,
Maria M. Alves
1
Institution
1
Department of Clinical Genetics
,
Erasmus University Medical Center – Sophia Children’s Hospital
,
2
Division of Psychosocial Research and Epidemiology
,
the Netherlands Cancer Institute
,
3
Department of Hematology
,
Erasmus Medical Center
,
4
Department of Pathology, GROW-School for Oncology and Developmental Biology
,
Maastricht University Medical Center
Simplified Intrafemoral Injections Using Live Mice Allow for Continuous Bone Marrow Analysis
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Journal (Medicine)
Auteur
Yusuke Nakauchi
1
,
Asiri Ediriwickrema
1
,
Daniel Martinez-Krams
1
,
Feifei Zhao
1
,
Athreya Rangavajhula
1
,
Daiki Karigane
1
,
Ravindra Majeti
1
Institution
1
Department of Medicine, Division of Hematology, Cancer Institute, and Institute for Stem Cell Biology and Regenerative Medicine
,
Stanford University School of Medicine
Local Anesthetic Thoracoscopy for Undiagnosed Pleural Effusion
Auteurs
|
Journal (Medicine)
|
Collections de méthodes
Auteur
Uffe Bodtger
1,2
,
José M. Porcel
3
,
Rahul Bhatnagar
4,5
,
Nick Maskell
4,5
,
Mohammed Munavvar
6,7
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Casper Jensen
1
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Paul Frost Clementsen
1,8
,
Daniel Bech Rasmussen
1,2
Institution
1
Respiratory Research Unit PLUZ, Department of Respiratory Medicine
,
Zealand University Hospital
,
2
Institute of Regional Health Research
,
University of Southern Denmark
,
3
Pleural Medicine Unit, Department of Internal Medicine
,
Hospital Universitari Arnau de Vilanova, IRBLleida
,
4
Respiratory Department, Southmead Hospital
,
North Bristol NHS Trust
,
5
Academic Respiratory Unit
,
University of Bristol
,
6
Lancashire Teaching Hospitals
,
7
University of Central Lancashire
,
8
Centre for HR and Education
,
Copenhagen Academy for Medical Education and Simulation
Whole Rabbit Eye Dissection and Ocular Tissue Preparation for Histological Analysis
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|
Journal (Biology)
Auteur
Erik A. Souverein
1
,
Aaron Nagiel
2,3,4
,
Ksenia Gnedeva
5,6
Institution
1
Keck School of Medicine
,
University of Southern California
,
2
The Vision Center, Department of Surgery
,
Children’s Hospital Los Angeles
,
3
The Saban Research Institute
,
Children’s Hospital Los Angeles
,
4
USC Roski Eye Institute, Department of Ophthalmology, Keck School of Medicine
,
University of Southern California
,
5
Eli and Edythe Broad CIRM Center for Regenerative Medicine and Stem Cell Research
,
University of Southern California
,
6
Tina and Rick Caruso Department of Otolaryngology-Head and Neck Surgery
,
University of Southern California
Ocular Tissue Embedding and Cryosectioning in Optimal Cutting Temperature Compound for Fluorescence Imaging
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Journal (Biology)
Auteur
Erik A. Souverein
1
,
Aaron Nagiel
2,3,4
,
Ksenia Gnedeva
5,6
Institution
1
Keck School of Medicine
,
University of Southern California
,
2
The Vision Center, Department of Surgery
,
Children’s Hospital Los Angeles
,
3
The Saban Research Institute
,
Children’s Hospital Los Angeles
,
4
USC Roski Eye Institute, Department of Ophthalmology, Keck School of Medicine
,
University of Southern California
,
5
Eli and Edythe Broad CIRM Center for Regenerative Medicine and Stem Cell Research
,
University of Southern California
,
6
Tina and Rick Caruso Department of Otolaryngology-Head and Neck Surgery
,
University of Southern California
Obtaining High-Quality Cryosections of Whole Rabbit Eye
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|
Journal (Biology)
Auteur
Erik A. Souverein
1
,
Aaron Nagiel
2,3,4
,
Ksenia Gnedeva
5,6
Institution
1
Keck School of Medicine
,
University of Southern California
,
2
The Vision Center, Department of Surgery
,
Children’s Hospital Los Angeles
,
3
The Saban Research Institute
,
Children’s Hospital Los Angeles
,
4
USC Roski Eye Institute, Department of Ophthalmology, Keck School of Medicine
,
University of Southern California
,
5
Eli and Edythe Broad CIRM Center for Regenerative Medicine and Stem Cell Research
,
University of Southern California
,
6
Tina and Rick Caruso Department of Otolaryngology-Head and Neck Surgery
,
University of Southern California
Patient Preparation and Subject Training for Hyperpolarized Xenon MRI
Auteurs
|
Journal (Medicine)
Auteur
Kai Ruppert
1
,
Luis Loza
1
,
Faraz Amzajerdian
1
,
Hooman Hamedani
1
,
Ryan Baron
1
,
Stephen Kadlecek
1
,
Rahim Rizi
1
Institution
1
Department of Radiology
,
University of Pennsylvania
Polarizing Xenon-129 for Hyperpolarized Xenon Spectroscopy
Auteurs
|
Journal (Medicine)
Auteur
Kai Ruppert
1
,
Luis Loza
1
,
Faraz Amzajerdian
1
,
Hooman Hamedani
1
,
Ryan Baron
1
,
Stephen Kadlecek
1
,
Rahim Rizi
1
Institution
1
Department of Radiology
,
University of Pennsylvania
Performing Hyperpolarized Xenon-129 Inhalation for Chemical Shift Saturation Recovery (CSSR) Measurement
Auteurs
|
Journal (Medicine)
Auteur
Kai Ruppert
1
,
Luis Loza
1
,
Faraz Amzajerdian
1
,
Hooman Hamedani
1
,
Ryan Baron
1
,
Stephen Kadlecek
1
,
Rahim Rizi
1
Institution
1
Department of Radiology
,
University of Pennsylvania
Quantitative Measure of Lung Structure and Function Obtained from Hyperpolarized Xenon Spectroscopy
Auteurs
|
Journal (Medicine)
|
Collections de méthodes
Auteur
Kai Ruppert
1
,
Luis Loza
1
,
Faraz Amzajerdian
1
,
Hooman Hamedani
1
,
Ryan Baron
1
,
Stephen Kadlecek
1
,
Rahim Rizi
1
Institution
1
Department of Radiology
,
University of Pennsylvania
Extraction of Diatom DNA from Water Samples and Tissues
Auteurs
|
Journal (Medicine)
Auteur
Yun-chao Zhou*
1
,
Bo Wang*
1
,
Jie Cai
2
,
Yu-zhao Xu
1
,
Xiao-shi Qin
1
,
Shan Ha
1
,
Bin Cong
1,3
,
Jian-hua Chen
1
,
Jian-qiang Deng
1
Institution
1
Hainan Province Tropical Forensic Engineering Research Center, Department of Forensic Medicine
,
Hainan Medical University, Hainan Provincial Academician Workstation (tropical forensic medicine)
,
2
Hainan Vocational College of Political Science and Law
,
3
Department of Forensic Medicine
,
Hebei Medical University
Diatom DNA Extraction from Water Sample and Human Lung Tissue Using a Modified DNA Extraction Kit
Auteurs
|
Journal (Medicine)
Auteur
Yun-chao Zhou*
1
,
Bo Wang*
1
,
Jie Cai
2
,
Yu-zhao Xu
1
,
Xiao-shi Qin
1
,
Shan Ha
1
,
Bin Cong
1,3
,
Jian-hua Chen
1
,
Jian-qiang Deng
1
Institution
1
Hainan Province Tropical Forensic Engineering Research Center, Department of Forensic Medicine
,
Hainan Medical University, Hainan Provincial Academician Workstation (tropical forensic medicine)
,
2
Hainan Vocational College of Political Science and Law
,
3
Department of Forensic Medicine
,
Hebei Medical University
Murine Bone Marrow Harvest and Isolation for the Characterization of Myeloid Leukemia Microenvironment
Auteurs
|
Journal (Cancer Research)
Auteur
Christina M. Kaszuba
1,2
,
Benjamin J. Rodems
1,3
,
Sonali Sharma
1,3
,
Edgardo I. Franco
1,2
,
John M. Ashton
1,3,4
,
Laura M. Calvi
1,5
,
Jeevisha Bajaj
1,3
Institution
1
Wilmot Cancer Institute
,
University of Rochester Medical Center
,
2
Department of Biomedical Engineering
,
University of Rochester
,
3
Department of Biomedical Genetics
,
University of Rochester Medical Center
,
4
Genomics Research Center
,
University of Rochester Medical Center
,
5
Division of Endocrinology and Metabolism, Department of Medicine
,
University of Rochester Medical Center
Murine Bone Marrow Staining for the Characterization of Myeloid Leukemia Microenvironment
Auteurs
|
Journal (Cancer Research)
Auteur
Christina M. Kaszuba
1,2
,
Benjamin J. Rodems
1,3
,
Sonali Sharma
1,3
,
Edgardo I. Franco
1,2
,
John M. Ashton
1,3,4
,
Laura M. Calvi
1,5
,
Jeevisha Bajaj
1,3
Institution
1
Wilmot Cancer Institute
,
University of Rochester Medical Center
,
2
Department of Biomedical Engineering
,
University of Rochester
,
3
Department of Biomedical Genetics
,
University of Rochester Medical Center
,
4
Genomics Research Center
,
University of Rochester Medical Center
,
5
Division of Endocrinology and Metabolism, Department of Medicine
,
University of Rochester Medical Center
Identifying Bone Marrow Microenvironmental Populations in Myelodysplastic Syndrome and Acute Myeloid Leukemia
Auteurs
|
Journal (Cancer Research)
|
Collections de méthodes
Auteur
Christina M. Kaszuba
1,2
,
Benjamin J. Rodems
1,3
,
Sonali Sharma
1,3
,
Edgardo I. Franco
1,2
,
John M. Ashton
1,3,4
,
Laura M. Calvi
1,5
,
Jeevisha Bajaj
1,3
Institution
1
Wilmot Cancer Institute
,
University of Rochester Medical Center
,
2
Department of Biomedical Engineering
,
University of Rochester
,
3
Department of Biomedical Genetics
,
University of Rochester Medical Center
,
4
Genomics Research Center
,
University of Rochester Medical Center
,
5
Division of Endocrinology and Metabolism, Department of Medicine
,
University of Rochester Medical Center
Semi-Automated Mechanical Dissociation of Mouse Tissues to Generate Single-Cell Suspensions
Auteurs
|
Journal (Bioengineering)
Auteur
Mayowa Amosu
1
,
Andrew J. Gregory
2
,
John D. Murtagh
2
,
Nitay Pavin
2
,
Carson Taylor Meyers
2
,
Juan Grano de Oro Fernandez
1
,
Kaitlyn Moore
1
,
Katharina Maisel
1
Institution
1
Fischell Department of Bioengineering
,
University of Maryland
,
2
UMD Terrapin Works
,
University of Maryland
Mechanical Dissociation of Tissues for Single Cell Analysis Using a Motorized Device
Auteurs
|
Journal (Bioengineering)
Auteur
Mayowa Amosu
1
,
Andrew J. Gregory
2
,
John D. Murtagh
2
,
Nitay Pavin
2
,
Carson Taylor Meyers
2
,
Juan Grano de Oro Fernandez
1
,
Kaitlyn Moore
1
,
Katharina Maisel
1
Institution
1
Fischell Department of Bioengineering
,
University of Maryland
,
2
UMD Terrapin Works
,
University of Maryland
Surgical Procedure for Intrapulmonary Tracheal Transplantation in Mice
Auteurs
|
Journal (Medicine)
Auteur
Yamato Suzuki
1,2
,
Stephen Juvet
1,2
,
Mingyao Liu
1,2
,
Shaf Keshavjee
1,2
Institution
1
Latner Thoracic Research Laboratories, Toronto General Hospital Research Institute
,
University Health Network
,
2
Temerty Faculty of Medicine
,
University of Toronto
1
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