Here we provide a method for identifying and isolating large numbers of GM-CSF driven myeloid cells using high speed cell sorting. Five distinct populations (Common myeloid progenitors, granulocyte/macrophage progenitors, monocytes, monocyte-derived macrophages, and monocyte-derived DCs) can be identified based on Ly6C and CD115 expression.
Cultures of monocyte-derived dendritic cells (moDC) generated from mouse bone marrow using Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) have recently been recognized to be more heterogeneous than previously appreciated. These cultures routinely contain moDC as well monocyte-derived macrophages (moMac), and even some less developed cells such as monocytes. The goal of this protocol is to provide a consistent method for identification and separation of the many cell types present in these cultures as they develop, so that their specific functions may be further investigated. The sorting strategy presented here separates cells first into four populations based on expression of Ly6C and CD115, both of which are expressed transiently by cells as they develop in GM-CSF-driven culture. These four populations include Common myeloid progenitors or CMP (Ly6C-, CD115-), granulocyte/macrophage progenitors or GMP (Ly6C+, CD115-), monocytes (Ly6C+, CD115+), and monocyte-derived macrophages or moMac (Ly6C-, CD115+). CD11c is also added to the sorting strategy to distinguish two populations within the Ly6C-, CD115- population: CMP (CD11c-) and moDC (CD11c+). Finally, two populations may be further distinguished within the Ly6C-, CD115+ population based on the level of MHC class II expression. MoMacs express lower levels of MHC class II, while a monocyte-derived DC precursor (moDP) expresses higher MHC class II. This method allows for the reliable isolation of several developmentally distinct populations in numbers sufficient for a variety of functional and developmental analyses. We highlight one such functional readout, the differential responses of these cell types to stimulation with Pathogen-Associated Molecular Patterns (PAMPs).
Culturing of murine bone marrow cells with the cytokine Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) is widely used as a method to generate monocyte-derived dendritic cells (moDC; also known as inflammatory DC) in large numbers 1,2,3,4,5. These cells have been extremely useful in a variety of studies of dendritic cell (DC) function 6,7,8. Typically, these murine bone marrow cells are cultured for 6-8 days and are then used for study of dendritic cell function 5. These cultures had long been considered mostly homogenous, consisting of a majority of differentiated moDC. More recently, it has become clear that at the end of this 6–8 day culture period, there are indeed many moDC, as well as a large subset of differentiated monocyte-derived macrophages (moMacs) 9,10,11. Our own studies have further extended these findings demonstrating that other subsets of less developed cells, such as moDC precursors (moDP) and monocytes, remain in the cultures at low frequency even after 7 days 10. Thus, studies of dendritic cells (DC) function using cells generated by this system could reflect the responses of a broader cohort of cell types than previously appreciated.
We have learned a great deal from the study of GM-CSF-generated moDC relating to the function of these cells in the final stages of differentiation 12,13,14. However, we understand significantly less about the developmental pathway of these cells 2,15,16 and of how and when they exhibit specific functions such as: responsiveness to Pathogen Associated Molecular Patterns (PAMPs), phagocytosis, antigen processing and presentation 13, and anti-bacterial activity. A protocol for isolation of large numbers of conventional Flt3L-driven DC progenitors and precursors has been reported 17. Isolation of these distinct populations was achieved using carboxyfluorescein succinimidyl ester (CFSE)-stained bone marrow cells (to track dividing cells) and culture in Flt3L for 3 days. Cells were then depleted of linage positive cells and sorted into progenitor and precursor populations based on CD11c expression 17. Another approach by Leenen's group to identify early progenitors of DC in GM-CSF-driven culture was to sort cells based on CD31 and Ly6C 18. The initial goal was to create a similar method for obtaining progenitors and precursors of GM-CSF-driven moDC. Due to the specific cell types generated by GM-CSF, we adapted the approach and sorting strategy based on expression of molecules that were expressed at early and later stages of development. We ultimately determined that Ly6C, CD115 (CSF-1 receptor), and CD11c were the best markers for distinguishing these cell types 10.
Here, we present a method for isolation of cells at several distinct stages of development along the pathway of differentiation driven by GM-CSF: Common Myeloid Progenitor (CMP), Granulocyte-Macrophage Progenitor (GMP), monocyte, monocyte-derived Macrophage (MoMac) and monocyte-derived DC (MoDC). The moMac population can be further segregated based on level of MHC class II expression, revealing a moDC precursor population (moDP) 10. We utilize a high-speed fluorescence-activated cell sorting (FACS) strategy to isolate these 5 populations based on expression of Ly6C, CD115, and CD11c. We then demonstrate the examination of these cells in functional assays revealing their responses to PAMP stimulation.
All animal work was approved by the Auburn University Institutional Animal Care and Use Committee in accordance with the recommendations outlined in the Guide for the Care and Use of Laboratory Animals of the National Institutes of Health.
1. Preparation for Bone Marrow Collection
2. Collection of Murine Bone Marrow Cells
3. Choosing Day of Sort
4. Staining strategy
5. Set Gates Based on Control Samples
NOTE: To prevent cell disruption due to the pressure of the high-speed flow stream, use a 100–130 µm nozzle for cell sorting.
6. Collection of Isolated Populations
In an effort to keep as many channels available for analysis as possible, viable cells were routinely selected based on forward and side scatter, excluding very small and very granular events (a typical gate is applied to all the dot plots in Figure 1A). To determine if this gating strategy reliably excluded dead cells, we stained with 7-Amino actinomycin D (7-AAD) (Figure 1B). 7AAD stains DNA in dead and dying cells due to membrane permeability, and is excluded by viable cells. Viability of GM-CSF cultured bone marrow cells was analyzed immediately post-harvest (PH) and 1, 3, and 5 PH. Cell analyzed immediately PH had approximately 10% of 7-AAD positive cells when a typical FSC/SSC gate was applied to freshly isolated cells from the bone marrow (Figure 1, Post-Harvest). A similar proportion of dead cells was also present at day 1 (~12%) and day 3 (~11%) of culture (Figure 1, 1 day PH and 3 days PH). By day 5, the number of dead cells within the gate was reduced to ~5% (Figure 1, 5 days PH). Thus, using such a viability gate is generally appropriate for sorting on day 5 and after. Therefore, if users are limited in their available parameters, FSC/SSC gating is generally appropriate. However, for more sensitive assays (particularly if they rely on precise cell numbers), incorporate a viability stain (suggestion).
Many protocols for propagation of dendritic cells recommend depletion of lineage positive cells, especially lymphocytes, from bone marrow prior to culture 11,17. This procedure is thought to increase the purity of the cells recovered upon GM-CSF-mediated differentiation. Typically, cells expressing markers of T cells (CD3), B cells (CD45R or CD19), and NK cells (NK1.1) may be depleted by positive selection using magnetic beads or cell sorting 11,17,18. However, based on the culturing system, lymphocytes were rarely recovered or detected in these assays. Thus, we sought to assess the longevity of lymphocytes maintained in the Ly6C-CD115- population among the GM-CSF-driven cells (Figure 2A). GM-CSF cultured bone marrow cells (that had not been lineage depleted) were stained with antibodies to CD3, CD45R, and NK1.1 (in the same fluorophore) and measured daily by flow cytometry (Figure 2B). Within the Ly6C-CD115- population, CD3/CD45R positive cells persisted strongly through Days 0–3 (Figure 2B). On Day 4, only a few CD3/CD45R positive cells remained, and by Day 5 and 6, there were no CD3/CD45R expressing cells present. Thus, within 4 days of culture in GM-CSF, lineage positive cells were essentially absent and were not detected at all at days 5 and 6 of culture.
The composition of the GM-CSF-driven cell culture changes daily in this system as the cells develop and differentiate (Table 1; Figure 3). At early time points, the most abundant cells are progenitors and precursors, and at later times the majority of cells are more differentiated 10. To determine how sorting on different days of culture might affect the subsequent developmental path or kinetics, sorts were performed 3, 5, and 7 days PH (Figure 3A). The development of the MoMac population (Ly6C-CD115+) was then tracked over 2–3 further days in culture (Figure 3B-3D).
When sorted 3 days PH, only 40% of Ly6C-CD115+ cells had decreased CD115 expression within 24 h post-sort (PS) (Figure 3B). By 48 h PS, the fraction that had down-regulated CD115 was 66%, and by 72 h, 70% of the cells had this phenotype. This phenotypic composition was maintained (~70-72% Ly6C-CD115-) even after further days of culture (data not shown). When sorted 5 days PH, ~75% of the cells were Ly6C-CD115-, having rapidly down-regulated CD115 within 24 h PS, and ~80% were CD115- after only 48 h. This distribution was maintained after 72 h (Figure 3C). Finally, when sorted 7 days PH, down-regulation of CD115 was also quite rapid. Within 24 h PS, ~75% of cells had down-regulated CD115 expression, and this trend was maintained after 48 h (Figure 3D). Interestingly, when sorted at day 7, the overall level of CD115 expression was lower on the cells within the CD115+ population.
Thus, these findings indicate that the kinetics of development are somewhat slower when sorting at an early day, such as day 3 sorted cells compared to the more rapid development and differentiation observed after sorting on day 5 or 7. Based on these results, a user seeking larger numbers of moDC should likely sort on day 5 or 7.
The maturation response of DC is well established 6,7,12,14. When treated with a variety of pathogen-associated molecular patterns (PAMPs), immature DC up-regulate the expression of MHC, costimulatory molecules, and pro-inflammatory cytokines, enhancing their T cell-activating capacity 6. However, it is less clear when developing cells gain the capacity to respond to PAMP stimulation and which feature of DC maturation they might exhibit. To determine which of the sorted populations would respond to maturation stimuli, each population was treated shortly after sorting with a cocktail of PAMPs including Poly I:C, lipopolysaccharides (LPS), and CpG DNA to trigger toll-like receptor (TLR) 3 (TLR3), TLR4, and TLR9, respectively. Cells were treated (or untreated) for 24 h and expression of CD86 and MHCII was measured by flow cytometry (Figure 4A–4B). Furthermore, IL-12p40/70 and IL-6 production was measured in the supernatants by cytokine array ELISA (Figure 4C-4D).
CMPs and GMPs expressed very low levels of MHC class II and CD86 in an unstimulated state, and these expression patterns did not change significantly upon exposure to the cocktail of PAMPs (Figure 4A and 4B). Likewise, the expression of MHC class II by the monocytes was also low and changed little upon PAMP exposure (Figure 4A). However, the expression of CD86 was moderate on the monocytes 24 h after sorting, and it increased further following 24 h stimulation. Higher basal expression of MHC class II and CD86 in the MoMacs and MoDCs was observed, and both populations exhibited a strong induction of these molecules upon PAMP stimulation. In terms of MHC class II expression following stimulation, there was no statistical difference between the CMPs, GMPs, and monocytes, while the MoMacs and MoDCs formed a distinct group. Yet, in terms of CD86 expression, the CMPs and GMPs cells were statistically different than MoMacs and MoDCs. However, monocytes were not different than MoMacs or MoDCs.
We next wanted to assess the relative ability of each of the five populations to produce cytokines in response to TLR stimulation. Thus, we performed a cytokine assay on the sorted populations after culture in the presence or absence of the TLR agonist cocktail used above. Cells were cultured with the stimuli for 24 h, then supernatants were collected. We observed very little IL-12p40/70 or IL-6 production by CMPs upon TLR stimulation (Figure 4C-4D). The second population, GMPs, were unable to produce IL-12p40/70 (Figure 4C), but these cells produced a low amount of IL-6 upon stimulation by PAMPs (Figure 4D). The highest levels of cytokine production were observed in the latter three populations. Monocytes and MoMacs had very similar patterns and magnitudes of cytokine production. Both greatly increased IL-12p40/70 and modestly increased IL-6 production up stimulation (Figure 4C-4D). Interestingly, in the presence of PAMPs MoDCs did not increase IL-12p40/70 secretion; however, this population greatly increased IL-6 production (Figure 4C-4D). These findings indicate that the sorted populations maintained their immunological functions after isolation.
Figure 1: Viable cells within Forward versus Side Scatter gate. Mouse bone marrow was cultured in GM-CSF, and viability was measured using 7-AAD (7-amino-actinomycin D) staining post-harvest (PH) and 1, 3, and 5 days post-harvest. (A) Viable cells were selected by applying a gate (Viable) which omitted small and highly granular events based on FSC and SSC. (B) Histograms of 7-AAD staining generated from events within Viable (FSC/SSC) gate. Events positive for 7-AAD indicate cells undergoing apoptosis. Arrows indicate viable cell gating. Please click here to view a larger version of this figure.
Figure 2: Lymphocytes within the Ly6C-CD115- population. Mouse bone marrow was cultured in GM-CSF and lymphocyte markers (CD3, CD145R, and NK1.1) were analyzed daily by flow cytometry. (A) Cell were stained with Ly6C-PE and CD115-APC to identify Ly6C-CD115- cells. Quadrant gate was applied based on single-color controls. Pseudocolor dot plot generated from day 0 (B) CD3, CD45R, and NK1.1 expression of Ly6C-CD115- cells was analyzed on day of harvest (day 0) until day 6. Cell counts were normalized to mode using a flow cytometry analysis software. Arrow indicates Ly6C-CD115- gating. Please click here to view a larger version of this figure.
Figure 3: Kinetics of development of Ly6C-CD115+ cells after sorting on different days. (A) Mouse bone marrow was harvested and cultured in GM-CSF. Aliquots of 1 x 107 cells were harvested (B) 3, (C) 5, or (D) 7 days post-harvest (PH). On the indicated days PH, Ly6C-CD115+ cells were sorted from mixed culture (Pre-sort) and analyzed immediately post-sort (PS). Sorted cells were re-cultured in GM-CSF, and changes in Ly6C/CD115 expression were analyzed daily by flow cytometry. Box and arrow indicate sorting gate. Please click here to view a larger version of this figure.
Figure 4: Maturation and cytokine expression following TLR stimulation. Cells were sorted into 5 populations on day 3 of culture in GM-CSF. They were then treated with a cocktail of PAMPs (LPS, Poly I:C, and CpG DNA) for 24 h. Mean fluorescent intensity (MFI) of (A) MHC class II and (B) CD86 was analyzed immediately post-sort (PS) and 24 h with and without PAMPs by flow cytometry. Error bars represent standard deviation of 3-5 replicate experiments. (C) IL-12p40/70 and (D) IL-6 in supernatants from 3 pooled samples were measured by cytokine array dot blot ELISA after 24 h with and without PAMPs. RLU; Relative light units; -/+ indicate the presence of the cell surface marker for the designated population. Please click here to view a larger version of this figure.
Day 3 | Day 5 | Day 7 | |||||
Phenotype | Cell type | Min | Max | Min | Max | Min | Max |
Ly6C-CD115-CD11c- | CMP | 3 x 106 | 4 x 106 | 5 x 105 | 1 x 106 | N/a | N/a |
Ly6C+CD115- | GMP | 2 x 106 | 3 x 106 | 2 x 106 | 3 x 106 | N/a | N/a |
Ly6C+CD115+ | Mono | 2 x 106 | 3 x 106 | 2 x 106 | 3 x 106 | 5 x 105 | 1 x 106 |
Ly6C-CD115+ | MoMac | 5 x 105 | 1 x 106 | 3 x 106 | 4 x 106 | 3 x 106 | 4 x 106 |
Ly6C-CD115-CD11c+ | MoDC | N/a | N/a | 5 x 105 | 1 x 106 | 3 x 106 | 4 x 106 |
Table 1: Expected minimum and maximum number of cells recovered post-sort per 1 x 107 cells. CMP (common myeloid progenitor); GMP (granulocyte/macrophage progenitor) Mono (monocytes); MoMac (monocyte-derived macrophage); MoDC (monocyte-derived dendritic cell); N/a (not available); Min (minimum cell yield out of 1 x 107 cells); Max (maximum cell yield out of 1 x 107 cells).
This protocol facilitates isolation of GM-CSF-driven progenitor and precursor cell types in numbers sufficient for several types of analyses including biochemical assays, assays of cellular function in vitro, or instillation in vivo. This method represents a significant advance in the field of monocyte-derived dendritic cell development, enabling the reliable isolation and identification of cells early in this pathway of development as well as those differentiated cell types more commonly isolated in prior studies.
Previous protocols for isolation of progenitors and precursors generated from bone marrow in vitro have relied on CFSE-staining to identify proliferative progenitor cells 17 or on staining with CD31 and Ly6C as markers of myeloid cells 18. The CFSE staining protocol described by Naik was designed for use in generation of Flt3L-driven DC progenitors and precursors 17. When we attempted this approach in the GM-CSF culture system, we encountered two main issues. The CFSE was somewhat cytotoxic to the developing cells and was so bright (even in divided cells) that it made compensation difficult. This approach proved to be unsuitable for our goals of isolating early cell types (progenitors), as well as cells across the developmental spectrum, from highly proliferative (CMPs/GMPs) to highly developed (MoDC/MoMac). We also tried the sorting strategy for GM-CSF-driven cells described by Leenen's group which was based on CD31 and Ly6C 18. However, we found that CD31 was problematic. It was expressed at very low levels (making it difficult to resolve the populations for clean sorting) by a vanishingly small subset of cells, and only very early during the culture period. In fact, CD31 expression was not detectable past day 2 of culture in GM-CSF 10.
Ly6C, however, was a very useful molecule for separating cells at different stages of development due to its transient pattern of expression 10. The addition of CD115 enabled us to more closely discern cells at intermediate and later stages of development that was not possible with CD31. We also examined other markers of progenitors such as CD34 and CD117 in hopes of isolating large numbers of these early cells 10. However, unlike that reported in the Flt3L system, we found that CD34 and CD117 were also expressed on a very small subset of cells and were virtually absent by day 3 of culture 17. These stem cell markers may be useful in future studies however, to distinguish subsets within the CMP or GMP populations.
There are several potential modifications to the protocol that may affect the yield of desired cell populations. First, the user may choose to apply a viability stain to exclude any dead cells. Based on the observations, the rate of dead cells within a typical forward and side scatter gate are relatively low in general, and pose problems only during the first few days of culture, coincident with decreases in lineage positive lymphocytes. However, for applications in which cell numbers must be precise, a viability stain will ensure exclusion of dead cells.
A second potential modification is depletion of lineage-positive lymphocytes prior to culture. We have tried this approach to address the small population of lineage positive cells that were regularly observed within the Ly6C-CD115- cell population. The overall cell yield was slightly lower at days 5 and 6, and the purity was not significantly higher (data not shown). Thus, the purity did not justify the reduced yield. Likewise, if the user plans to sort on day 5 or after, the frequency of lymphocytes within the culture is well below 1% and should not present a problem.
Finally, because this strategy is designed to isolate cells across a large developmental spectrum the user should tailor the timing of their sort to collect as many of the desired populations as possible. This sorting strategy faithfully yields the cell types indicated regardless of the day of culture on which the cells are sorted. For example, cells with the phenotype Ly6C+ CD115- CD11c- are true to the GMP phenotype and function similarly whether they are sorted and isolated on day 3 or 5 of culture. However, the frequency of these cells is much greater on day 3 than 5, so if the goal is isolation of this cell type, sorting on day 3 would be recommended. It is also notable that cells sorted on day 3 progress through the subsequent developmental stages with slower kinetics than if they were sorted on day 5 or 7 (Figure 3).
While this method allows for the clear delineation and isolation of 5–6 distinct populations along the developmental spectrum, there are likely many more populations or transitional stages along this pathway. Within each of the five described populations there may be several sub-populations at slightly different increments of development. For example, we have observed "distinct" populations with intermediate levels of CD115 and of Ly6C which undergo slightly different patterns of development, in terms of how many moMac and moDC are generated (data not shown). It is also likely that populations previously observed in vivo are present in the culture and sorting system, but these have been difficult to identify due to their very low frequency. Populations such as cMOP 19, MDP 20, or CDP 21 are likely present, but may be obscured within the larger populations. Future studies will be needed to further clarify the numerous developmental stages that may be isolated within this sorting framework with the addition of specific markers of differentiation. The value of this sorting strategy is that it allows consistent isolation of large numbers of developmentally distinct stages during DC ontogeny.
The authors have nothing to disclose.
We are grateful for technical assistance from Alison Church Bird at the Auburn University School of Veterinary Medicine Flow Cytometry Facility, for funding from the NIH to EHS R15 R15 AI107773 and to the Cellular and Molecular Biology Program at Auburn University for summer research funding to PBR.
RPMI 1640 | Corning | 15-040-CV | |
Fetal Calf Serum (FCS) | HyClone | SV30014.04 | to supplement complete medium and FWB |
GlutaMAX | Gibco | 35050 | to supplement complete medium |
2-mercaptoethanol (2-ME) | MP Biomedical | 190242 | to supplement complete medium |
75mM Vacuum Filter | Thermo Scientific | 156-4045 | to sterilize complete media |
ACK Lysis Buffer | Lonza | 10-548E | to lyse red blood cell |
HEPES buffer | Corning | 21-020-CM | to rescue leukocytes after red blood cell lysis |
Phosphate Buffered Saline (PBS), Dulbecco's | Lonza | 17-512F | must be endotoxin free; chilled at 4 °C |
35µm Cell filter | Falcon | 352235 | to break apart clumps before running through cytometer. |
GM-CSF | Biosource | PMC2011 | usable concentration of 10ng/mL |
Tissue cultured treated plate | VWR | 10062-896 | for bone marrow cells after harvest |
Anti-Ly6C, Clone HK1.4 | Biolegend | 128018 | |
Anti-CD115, Clone AFS98 | Tonbo Bioscience | 20-1152-U100 | |
Anti-CD11c, Clone HL3 | BD Biosciences | 557400 | to differeniate CMP and MoDCs |
MoFlo XPD Flow Cytometer | Beckman Coulter | ML99030 | |
BD Accuri C6 | BD Biosciences | 660517 | |
100% Ethanol | Pharmco-Aaper | 111000200CSPP | |
60mm Petri Dish | Corning, Inc | 353002 | |
50mL Conical tube | VWR | 21008-242 | |
C57BL/6 Mice | The Jackson Laboratory | 000664 | Female; 10-20 weeks old |
Biosafety Hood | Thermo Scientific | 8354-30-0011 | |
10mL Syringe | BD Biosciences | 301604 | |
23-gauge needle | BD Biosciences | 305145 | |
Centrifuge 5810 R | eppendorf | 22625501 | |
FlowJo Software v10 | BD Biosciences | Version 10 | flowjo.com |