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16.12:

Structure of Porins

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Cell Biology
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JoVE 核 Cell Biology
Structure of Porins

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Porins are barrel-shaped proteins of the outer mitochondrial membrane that allow the free diffusion of ions and metabolites through a central channel. Porins are formed of beta-sheets arranged into a circular hollow structure with hydrophobic amino acid residues facing the lipid bilayer and the hydrophilic amino acid residues lining the inner channel. Porin precursors contain conserved sequence motifs called beta signals at their C-terminal end. These signals are crucial for precursor recognition and assembly. Porin precursors are translocated through the TOM complex into the intermembrane space. TIM chaperones bind and guide these precursors to the sorting and assembly machinery complex or the SAM complex on the outer mitochondrial membrane. The SAM complex is a membrane protein comprising a beta-barrel core and two receptors on the cytosolic side of the membrane. SAM recognizes the beta signals within the precursor peptide and guides them to fold into beta-hairpins. With successive folding, the beta-hairpins begin to assemble into a beta-barrel structure to form the porin.

16.12:

Structure of Porins

Mitochondria, chloroplasts, and gram-negative bacteria have transmembrane, beta-barrel proteins called porins to mediate the free diffusion of ions and metabolites across the membrane. Mitochondrial porin precursors contain conserved amino acid sequences called beta signals at their C-terminal. Beta signals have a  motif of PoXGXXHyXHy (Po-Polar, X-Any amino acid, G-Glycine, Hy-LargeHydrophobic), which are crucial for precursor recognition to initiate precursor assembly. Beta-barrel precursors move through the TOM complex on the outer mitochondrial membrane into the intermembrane space. The precursors interact with TIM chaperones inside the intermembrane space and are guided to a trimeric complex called the Sorting and Assembly machinery complex or SAM complex. 

SAM complex has three components: a beta-barrel core called the SAM50 and accessory proteins SAM35 and SAM37. SAM50 comprises 16-beta-strands that span the outer membrane and expose an N-terminal polypeptide transport-associated domain or POTRA domain in the intermembrane space. The POTRA domain functions as a receptor for beta-barrel precursors and facilitates beta-strand assembly. In contrast, SAM50 interacts closely with accessory proteins SAM35/SAM37 towards the cytosolic side to help fold the beta-barrel precursors entering the intermembrane space.

Suggested Reading

  1. Kathryn A. Diederichs et al., Structural insight into mitochondrial β-barrel outer membrane protein biogenesis. NATURE COMMUNICATIONS (2020) 11:3290 | https://doi.org/10.1038/s41467-020-17144-1.
  2. Alexandra I.C Hohr et al., Assembly of beta-barrel proteins in the mitochondrial outer membrane. Biochimica et Biophysica Acta 1853 (2015) 74-88.
  3. Alberts, Bruce, et al. Molecular Biology of the Cell. 6th ed. Garland Science, 2017. Pp 662.
  4. Nils Wiedemann and Nikolaus Pfanner. Mitochondrial Machineries for Protein Import and Assembly. Annu. Rev. Biochem. 2017. 86:685–714.
  5. Bolter et al., Ion channels in the outer membranes of chloroplasts and mitochondria: open doors or regulated gates? EMBO J (2001)20:935-940.