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CyVerseリソースの活用<em>デ・ノヴォ</em>保存されていない（非モデル）生物の比較トランスクリプトーム
JoVE Journal
Genetics
This content is Free Access.
JoVE Journal Genetics
Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved (Non-model) Organisms
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CyVerseリソースの活用<em>デ・ノヴォ</em>保存されていない（非モデル）生物の比較トランスクリプトーム

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9,044 Views

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10:41 min

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May 09, 2017

DOI:

10.3791/55009-v

DOI:
10.3791/55009-v

•

10:41 min
May 09, 2017

•

1 Views
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1BIO5 Institute,University of Arizona, 2The School of Plant Sciences,University of Arizona, 3Genetics GIDP,University of Arizona, 4Biology Department,University of Massachusetts Amherst, 5School of Animal and Comparative Biomedical Sciences,University of Arizona, 6CyVerse,University of Arizona

Summary

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This protocol outlines a comparative de novo transcriptome assembly and annotation workflow for novice bioinformaticians. The workflow is available for free entirely through CyVerse and connected by the Data Store. Command line and graphical user interfaces are used, but all code needed is available to copy and paste.

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Cite this Article

Joyce, B. L., Haug-Baltzell, A. K., Hulvey, J. P., McCarthy, F., Devisetty, U. K., Lyons, E. Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved (Non-model) Organisms. J. Vis. Exp. (123), e55009, doi:10.3791/55009 (2017).

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