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Reliable Method for Assessing Seed Germination, Dormancy, and Mortality under Field Conditions

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Reliable Method for Assessing Seed Germination, Dormancy, and Mortality under Field Conditions

1. Gather Seed from Multiple Species or Controlled Crosses of a Single Species

Note: This example used seed from 15 cross types within the species Helianthus annuus (sunflower) using wild, hybrid, and crop types as the maternal (seed producing) parent.

  1. At the end of the growing season, collect mature seed heads in labeled bags. Clean seed from chaff and place seed in envelopes labeled with parental cross type in standard format (i.e., maternal x paternal).
  2. Bulk seed together in large envelopes using equal amounts of seed from an equal number of identical parental cross types. For example, 100 seeds from 10 cross types with the same maternal and paternal parents. Label the envelopes with identifying (cross type) information. These large envelopes are seed masters for use in filling burial strips in Section 2.
Maternal Parent
Paternal Parent Wild: WxW F1: WxC Crop: CxC
Wild: WxW 0% WxW 25% F1xW † 50% CxW †
BC: WxF1 or F1xW 12.5% WxBC 37.5% F1xBC 62.5% CxBC
F1: WxC 25% WxF1 50% F1xF1 75% CxF1
F2: F1xF1 25% WxF2 50% F1xF2 75% CxF2
Crop: CxC 50% WxC † 75% F1xC † 100% CxC

Table 1. Parental cross types produced from hand pollination. Sunflower crop-wild hybrid cross types were produced with hand-pollination for use in seed burial experiment. For all cross types, the maternal parent listed first and the paternal parent listed second. Cross types marked with † are part of reciprocal cross type pairs with the same % crop alleles but different maternal parents. Table has been previously published in: Pace, B. A. et al. (2015)15.

2. Create Custom Seed Burial Strips

NOTE: For this example, we had three removal date treatments and 15 replicates, so we required 45 strips total. This example uses 15 compartments per strip so, we required enough fine-meshed polyester fabric or mosquito netting to house 15, 7 x 10 cm compartments. See Figure 1.

  1. Start by cutting a 20 x 105 cm strip of fabric for each seed strip.
  2. Measure and mark compartments, then fold the fabric in half. Using a high-temperature glue gun, seal one short (10 cm) end. Once the glue cools slightly, but not completely, press the fabric sides together to create a seal.
    CAUTION: High-temperature glue and glue gun tips can cause burns if contact with skin is prolonged.
  3. Glue lines from the folded edge to the open short end at each compartment mark. Press the two fabric sides together along the glue lines to ensure seals without holes between compartments. Seeds migrating between compartments contribute to experimental error.
    NOTE: Now that the compartments have been created, the unfolded edge should remain open and ready to receive seed and their identifying information (cross type name).
  4. Randomly assign seed cross types to compartments for each strip.
    1. Fill seed compartments with a uniform number of seeds (20 for each compartment are used in this example). For labels, use industrial permanent markers on cut-to-fit plastic garden darts so that they are able to withstand burial.
      NOTE: Alternative labeling methods may be used.
    2. After each compartment is filled with seed and its label, seal the compartment immediately with the high-temperature glue gun. Proceed until the entire seed strip is completely sealed. Label overall strip in the first compartment with replicate, block and/or treatment information.
      NOTE: For our study, since we had temporal removals, blocks, and replicate strips within blocks, we included all of this information.
    3. Check for gaps between compartments and spot glue as needed before moving on to the next strip.

Figure 1
Figure 1. Burial seed strip schematic. Example of burial strip showing cross type identification for individual compartments. Maternal parent is listed first with the paternal parent listed second. Colors indicate different maternal parentage, with yellow for wild, blue for F1 hybrid, and red for crop. Please click here to view a larger version of this figure.

3. Bury Seed Strips in the Field

  1. Dig plots to the specified depth to house strips. Assign strips to individual blocks in which strips are randomly arranged to allow for removal date to be used as the main plot and compartment identity (in this example, cross type) as the subplot in analysis.
  2. Cover strips with earth. Cut metal mesh hardware cloth to be 10 cm larger than plots and place over buried strips. Use U-pins to secure edges and cover cloth edges with earth.
    NOTE: This covering is for excluding burrowing seed predators. As another option, Mercer et al.13 constructed and buried boxes of hardware cloth that surrounded the seed strips due to intense gopher pressure in their field location.)
  3. Place colored surveyor's flags to distinguish strip location and removal dates to complement clear written records.

4. Excavate Strips and Evaluate Seed

  1. Dig up seed strips assigned to a given removal date. Maintain the strips in a cool moist environment until they reach the laboratory where seed evaluation will take place. This can be accomplished by wrapping the strips in wet newspaper and placing them in a cooler for transport or overnight shipping.
  2. Rinse mud and soil from strips in water until strips are clean enough that external debris will not obscure seeds.
  3. Use scissors to cut open one compartment at a time. Count germinated seeds and remove them. Count clearly dead seeds (e.g., rotting, or putrefied seeds). Place ungerminated seeds on labeled, wet Petri-sized blotter paper to further distinguish ungerminated, dormant, and dead seeds.
    1. Place Petri dishes with ungerminated seeds into a growth chamber set for standard germination conditions: 25 °C /10 °C 12 hr day/night. Allow seeds one week to germinate. Any that do, count these as viable, but ungerminated since they did not germinate under field conditions.
  4. After the growth chamber treatment, test remaining ungerminated seeds for viability using Tetrazolium chloride (TZ)13. To accomplish this, make up a percent solution of TZ appropriate for the study species using the AOSA Tetrazolium Testing Handbook14. For this example, a 1% solution is used.
    1. Cut the ungerminated seeds in half and place one half were the embryo and endosperm are visible in a Petri dish containing enough TZ solution to cover the seed (seeds may float, this is okay).
    2. Place TZ Petri dishes into an incubator set at 30 °C and wait 3 hr. Note: Higher temperatures will result in a faster reaction, if desired, but overstaining is a risk.
  5. Remove Petri dishes from the incubator and evaluate. Seeds that have stained red in their embryos are germinable, while unstained seeds are dead. Consult the AOSA Tetrazolium Testing Handbook for more detail on distinguishing marginal cases and particular species.

Reliable Method for Assessing Seed Germination, Dormancy, and Mortality under Field Conditions

Learning Objectives

Cross types with varied maternal parentage and crop allele percentage (Table 1) differed across removal dates in percent germinated, ungerminated, and dead seed (Fig. 2 and 3). Using TZ testing of ungerminated seeds, we found some truly dormant seeds at the second removal (early spring) (Table 2), while all seeds ungerminated by the third removal (spring) were found to be truly dormant.

In general, lower crop allele percentages reduced maladaptive germination in late fall (Fig. 2). At the early spring removal, all cross types had high germination, but differed in their proportion dead and ungerminated (Fig. 3). In particular, cross types with crop maternal parentage had higher mortality while maternal wild cross types were more likely to remain ungerminated. By spring, germination declined for some cross types. While counter-intuitive, this is likely due to seed mortality within the burial strips for earlier germinating cross types. Accordingly, mortality was higher for more crop-like cross types (i.e., those with higher crop allele percentages) produced by crop maternal parents (Fig. 3)

Figure 2
Figure 2. Germination at the first removal in late fall. Germination of sunflower crop-wild cross types at the first removal date, in late fall. Cross types are organized on the y-axis by increasing crop allele percentages as marked. Maternal parent is listed first for each cross type. Germination least squares means (with s.e. bars) followed by the same letter are not significantly different using a Tukey-Kramer adjustment for multiple comparisons. Figure has been previously published in: Pace, et al. (2015)15. Please click here to view a larger version of this figure.

Figure 3
Figure 3. Percent Germinated, ungerminated, and mortality for the second removal (early spring) and third removal (spring). Percent germinated for early spring (A), spring (B), percent ungerminated for early spring (C), spring (D), and percent dead for early spring (E) and spring (F) removal dates. Sunflower crop-wild hybrid cross types are organized by increasing crop allele percentages, with the most crop-like on the top of the y-axis and the most wild-like at the bottom of the y-axis. Cross type maternal parent is listed first. Least squares means for germinated, ungerminated and dead seed (with s.e. bars) followed by the same letter are not significantly different using a Tukey-Kramer adjustment for multiple comparisons. Figure has been previously published in: Pace, et al. (2015)15. Please click here to view a larger version of this figure.

Cross type TZ Dormant Standard Error
WxW 0.071 0.0131
WxBC 0.041 0.0126
WxF1 0.089 0.0136
WxF2 0.054 0.0126
F1xW 0 0.0126
F1xBC 0.013 0.0126
WxC 0.075 0.0131
F1xF1 0.007 0.0126
F1xF2 0.013 0.0126
CxW 0 0.0126
CxBC 0 0.0126
F1xC 0 0.0126
CxF1 0 0.0126
CxF2 0 0.0126
CxC 0 0.0126

Table 2. Seeds likely to contribute to a persistent seed bank. Least squares means for the percent dormant fraction of ungerminated seeds at the second (early spring) removal. Seeds were determined to be viable using tetrazolium chloride after incubation in favorable germination conditions. Table has been previously published in: Pace, et al. (2015)15.

List of Materials

Small coin envelopes Any
Large coin envelopes Any
fine meshed polyester mosquito netting Any
high-temperature glue gun Any
high-temperature glue stick refills Any
Industrial permenant markers Any
plastic garden labels Any
scissors Any
Shovel Any
Metal mesh hardward cloth Any
Surveyor's flags, multiple colors Any
Wet newspaper Any
cooler Any
blotter paper Any
petri dishes Any
Temp. controlled growth chamber Any
razor blades Any
petri dishes Any
Tetrazolium chloride Any
water Any
heat incubator Any

Lab Prep

We describe techniques for approximating seed bank dynamics over time using Helianthus annuus as an example study species. Strips of permeable polyester fabric and glue can be folded and glued to construct a strip of compartments that house seeds and identifying information, while allowing contact with soil leachate, water, microorganisms, and ambient temperature. Strips may be constructed with a wide range of compartment numbers and sizes and allow the researcher to house a variety of genotypes within a single species, different species, or seeds that have experienced different treatments. As opposed to individual seed packets, strips are more easily retrieved as a unit. While replicate packets can be included within a strip, different strips can act as blocks or can be retrieved at different times for observation of seed behavior over time. We used a high temperature glue gun to delineate compartments and sealed the strips once the seed and tags identifying block and removal times were inserted. The seed strips were then buried in the field at the desired depth, with the location marked for later removal. Burrowing animal predators were effectively excluded by use of a covering of metal mesh hardware cloth on the soil surface. After the selected time interval for burial, strips were dug up and seeds were assessed for germination, dormancy and mortality. While clearly dead seeds can often be distinguished from ungerminated living ones by eye, dormant seeds were conclusively identified using a standard Tetrazolium chloride colorimetric test for seed viability.

We describe techniques for approximating seed bank dynamics over time using Helianthus annuus as an example study species. Strips of permeable polyester fabric and glue can be folded and glued to construct a strip of compartments that house seeds and identifying information, while allowing contact with soil leachate, water, microorganisms, and ambient temperature. Strips may be constructed with a wide range of compartment numbers and sizes and allow the researcher to house a variety of genotypes within a single species, different species, or seeds that have experienced different treatments. As opposed to individual seed packets, strips are more easily retrieved as a unit. While replicate packets can be included within a strip, different strips can act as blocks or can be retrieved at different times for observation of seed behavior over time. We used a high temperature glue gun to delineate compartments and sealed the strips once the seed and tags identifying block and removal times were inserted. The seed strips were then buried in the field at the desired depth, with the location marked for later removal. Burrowing animal predators were effectively excluded by use of a covering of metal mesh hardware cloth on the soil surface. After the selected time interval for burial, strips were dug up and seeds were assessed for germination, dormancy and mortality. While clearly dead seeds can often be distinguished from ungerminated living ones by eye, dormant seeds were conclusively identified using a standard Tetrazolium chloride colorimetric test for seed viability.

Procedure

We describe techniques for approximating seed bank dynamics over time using Helianthus annuus as an example study species. Strips of permeable polyester fabric and glue can be folded and glued to construct a strip of compartments that house seeds and identifying information, while allowing contact with soil leachate, water, microorganisms, and ambient temperature. Strips may be constructed with a wide range of compartment numbers and sizes and allow the researcher to house a variety of genotypes within a single species, different species, or seeds that have experienced different treatments. As opposed to individual seed packets, strips are more easily retrieved as a unit. While replicate packets can be included within a strip, different strips can act as blocks or can be retrieved at different times for observation of seed behavior over time. We used a high temperature glue gun to delineate compartments and sealed the strips once the seed and tags identifying block and removal times were inserted. The seed strips were then buried in the field at the desired depth, with the location marked for later removal. Burrowing animal predators were effectively excluded by use of a covering of metal mesh hardware cloth on the soil surface. After the selected time interval for burial, strips were dug up and seeds were assessed for germination, dormancy and mortality. While clearly dead seeds can often be distinguished from ungerminated living ones by eye, dormant seeds were conclusively identified using a standard Tetrazolium chloride colorimetric test for seed viability.

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