We present an optimized tandem mass tag (TMT) labeling protocol that includes detailed information for each of the following steps: protein extraction, quantification, precipitation, digestion, labeling, submission to a proteomics facility, and data analyses.
Suzuki-Hatano, S., Tsai, A., Daugherty, A., Pacak, C. A. TMT Sample Preparation for Proteomics Facility Submission and Subsequent Data Analysis. J. Vis. Exp. (160), e60970, doi:10.3791/60970 (2020).