This protocol provides a comprehensive dissection and analysis guide for the use of deep ocular landmarks, s-opsin immunohistochemistry, Retistruct, and custom code to accurately and reliably orient the isolated mouse retina in anatomical space.
Sondereker, K. B., Stabio, M. E., Jamil, J. R., Tarchick, M. J., Renna, J. M. Where You Cut Matters: A Dissection and Analysis Guide for the Spatial Orientation of the Mouse Retina from Ocular Landmarks. J. Vis. Exp. (138), e57861, doi:10.3791/57861 (2018).