Recombinant Retroviral Production and Infection of B Cells

1. Splenic B-Lymphocyte Isolation and Stimulation

1. Harvest the spleens from AID-deficient mice ¹² between 2-3 months of age. The isolation of spleen is performed in sterile conditions and the organs are temporarily kept in cold phosphate buffer saline (PBS) containing 15% fetal bovine serum (FBS).
2. The spleen is then transferred to a sterile tissue culture hood and homogenized in 5 mL of PBS supplemented with 2.5% FBS. Transfer the homogenate to a 15 mL falcon tube.
3. Centrifuge the homogenized splenic tissue sample at 1000rpm for 10 minutes at 4°C to pellet the cells.
4. Decant the supernatant after centrifugation. Resuspend the cell pellet in 10 mL red blood cell (RBC) lysis buffer at room temperature for 7 minutes to avoid contamination by red blood cells.
5. Centrifuge sample at 1000 rpm for 10 minutes and decant the supernatant and resuspend the cells in 10 mL PBS containing 2.5% FBS.
6. Remove 100 μL aliquot and count the cells at a 1:1000 dilution using a standard hemacytometer using trypan blue to exclude any dead cells. Approximately 20-30 million cells can be obtained per spleen.
7. Centrifuge sample at 1000rpm for 10 minutes and decant the supernatant.
8. Resuspend the pellet in 0.5%BSA/PBS containing 2mM EDTA at a concentration of 10⁷cells per 90 μL.
9. Add anti-CD43 antibody coated magnetic beads to the cells to specifically bind non-B cells. Use 10 μL beads per 90 μL (10⁷cells). Mix well and incubate at 4°C for 20 minutes.
10. Once the cells have been labeled, wash them by adding 2.5% FBS/PBS to top of the tube. Centrifuge sample at 1000 rpm for 10 minutes.
11. Decant the supernatant. Resuspend the cells in 0.1% BSA/PBS at a concentration of 10×10⁷cells per ml.
12. Mount a magnetic sorting column on a magnetic separator. Position a conical tube directly underneath the column to collect the flow-through and load the column with 3mL 0.5% BSA/PBS to prime and wash.
13. Once the wash fluid has flowed through, replace with a new collection tube. If the sample is less than 1 mL, adjust sample volume to 1 mL with 0.5 %BSA/PBS/EDTA and load the sample in the column. Load only 1 mL maximum of cells per column and use multiple columns if necessary.
14. Allow the cells to passively flow through the column and collect the unbound cells in the conical tube under the column. Wash the column 4 times with 3 mL 0.5% BSA/PBS while continuing to collect the flow-through.
15. Collect all flow-through in which CD43 negative resting B cells will be enriched. Discard the column. Centrifuge flow-through at 1000 rpm for 10 minutes.
16. Drain the supernatant and add 10 mL medium (15% FCS/ +glutamine, Pen/Strep, Non-Essential amino acids, 50 μM Β-ME)
17. Count the cells and culture at 10⁶ cells per ml.
18. In order to stimulate B cell growth and proliferation, supplement the medium with recombinant IL-4 and anti-CD40 antibody such that the final concentrations are 20 μg/mL and 1 μg/mL, respectively, and transfer the cells to a culture flask.
19. Culture the cells overnight. Count cells and dilute to 10⁶ cells per ml, adding IL-4 and CD40 as appropriate.
20. Culture cells for 72 hours before viral infection.

2. Transfection of Producer Cells

Use established protocols for transfection using either cationic lipids or calcium phosphate. Transfect 10cm³ plate per DNA construct, using 100 μg plasmid DNA per plate. We routinely use calcium phosphate transfection method ^{13, 14} and note high viral titer when supplemented with chloroquine.

1. Use 60%-70% confluent Phoenix cells as producer cells to be transfected. At this confluence cell count should be 5 million cells per 10 cm plate.
2. One hour prior to transfection, replace the media with fresh complete media for Phoenix cell growth.
3. In a sterile eppendorpf tube, combine 100 μg of packaging construct DNA, 250 μL of 0.5M CaCl₂, and adjust the final volume to 500 μL with sterile water
4. Using a 1 mL pipette, vigorously mix this solution with 500 μL 2X HNP in a 15mL polypropylene tube
5. Allow this mixture to rest at room temperature for 8-10 minutes. During this time a precipitate will form.
6. Add the transfection mixture drop-wise to the cells while swirling the medium to evenly distribute the mixture throughout.
7. Incubate the cells at 37°C for 12 hours.
8. 12 hours post-transfection, replace the medium with 8ml complete B cell growth medium and return the cells to the 37°C incubator.

3. Infection of Stimulated Splenic B Cells

1. Remove supernatant from Phoenix cells 48hr post-transfection and pass the supernatant through a 0.2 micron filter to remove any cell debris.
2. Mix 3 mL of virus-containing supernatant with 3 mL of pre-activated B cells (as in step 1). In order to enhance viral adsorption to the cells, add polybrene at a final concentration of 16 μg per mL.
3. Infect the cells by centrifugation at 2500 rpm for 90 minutes at 30°C.
4. Immediately after the spin, incubate for a further 48-72 hrs at 37°C to allow for cell growth and proliferation.

4. Flow Cytometry Analysis

1. Using a flow cytometer, analyze the cells for surface expression of B220 and surface IgG1. The presence of IgG1 at the surface of the cells indicates that class switch recombination has occurred as a result of successful rescue via the retroviral complementation of the AID gene.

5. Representative Results

We have successfully rescued the deficiency of the protein factor Activation Induced Cytidine Deaminase (AID) from AID-deficient (AID-/-) B-lymphocytes using retroviral transduction. Briefly, we generated recombinant retroviruses expressing mouse AID (mAID) protein by transfecting Phoenix cells with pMX-mAID-GFP ^15-18. The harvested viruses were infected into AID-deficient B cells obtained from AID-deficient mice in ex vivo class switch recombination (CSR) stimulation conditions ¹⁹. The infected B cells were then analyzed for CSR to IgG1 after 72hrs in culture using flow cytometry analysis. Figure 2 shows the detection of IgG1 at the surface of B cells with AID but not the empty construct, indicating that CSR has occurred as a result of AID expression rescue.

Figure 1: Scheme of retroviral packaging within producer cells: Gene of interest, represented by Ψ, was subcloned into pMX-IRES-GFP, as previously described ¹⁵. The plasmid was transfected into an ecotropic viral packaging cell line capable of producing gag-pol and envelope protein (Phoenix, Orbigen), using calcium phosphate method ^{13, 14}. Forty-eight hours after transfection, supernatant containing viral particles was harvested for infection into target primary B cells obtained from mice.

Figure 2: AID deficient B cells, stimulated with anti-CD40 and IL-4 were infected with a retrovirus containing pMX-mAID-GFP or a retrovirus expressing GFP alone. The level of CSR to IgG1 was evaluated by FACS analysis.