Transcranial optical imaging allows wide-field imaging of cerebrospinal fluid transport in the cortex of live mice through an intact skull.
Cerebrospinal fluid (CSF) flow in rodents has largely been studied using ex vivo quantification of tracers. Techniques such as two-photon microscopy and magnetic resonance imaging (MRI) have enabled in vivo quantification of CSF flow but they are limited by reduced imaging volumes and low spatial resolution, respectively. Recent work has found that CSF enters the brain parenchyma through a network of perivascular spaces surrounding the pial and penetrating arteries of the rodent cortex. This perivascular entry of CSF is a primary driver of the glymphatic system, a pathway implicated in the clearance of toxic metabolic solutes (e.g., amyloid-β). Here, we illustrate a new macroscopic imaging technique that allows real-time, mesoscopic imaging of fluorescent CSF tracers through the intact skull of live mice. This minimally-invasive method facilitates a multitude of experimental designs and enables single or repeated testing of CSF dynamics. Macroscopes have high spatial and temporal resolution and their large gantry and working distance allow for imaging while performing tasks on behavioral devices. This imaging approach has been validated using two-photon imaging and fluorescence measurements obtained from this technique strongly correlate with ex vivo fluorescence and quantification of radio-labeled tracers. In this protocol, we describe how transcranial macroscopic imaging can be used to evaluate glymphatic transport in live mice, offering an accessible alternative to more costly imaging modalities.
Cerebrospinal fluid (CSF) bathes the brain and spinal cord and is involved in maintaining homeostasis, supplying nutrients, and regulating intracranial pressure1. CSF in the subarachnoid space enters the brain through a network of perivascular spaces (PVS) surrounding cortical pial arteries and then flows down along penetrating arterioles2. Once in the parenchyma, CSF exchanges with interstitial fluid (ISF), carrying harmful metabolites such as amyloid-β (Aβ) and tau protein aggregates out of the brain through low resistance white matter tracts and perivenous spaces2,3. This pathway is dependent on astroglial aquaporin-4 (AQP4) channels and has therefore been termed the glial-lymphatic (glymphatic) system4. Waste products of the neuropil are ultimately cleared from the CSF-ISF through lymphatic vessels near cranial nerves and in the meninges out towards the cervical lymph nodes5. The failure of this system has been implicated in several neurologic diseases such as Alzheimer’s disease6,7, traumatic brain injury3, and ischemic and hemorrhagic stroke8.
CSF transport can be visualized by infusing tracers into the cisterna magna (CM)9,10 and glymphatic studies in the past have mainly utilized two-photon microscopy4,11,12,13, magnetic resonance imaging (MRI)14,15,16,17, and ex vivo imaging3,6,11,18 to evaluate tracer kinetics. Two-photon microscopy is a suitable method for detailed imaging of CSF tracers in PVSs and the parenchyma due to its high spatial resolution, however, it has a narrow field of view and requires an invasive cranial window or thinning of the skull. Ex vivo imaging, in combination with immunohistochemistry, enables multilevel analyses ranging from single cells up to the whole brain19. However, the process of perfusion-fixation that is required to observe the post-mortem tissue produces profound changes in CSF flow direction and collapses the PVS, significantly altering the distribution and the location of the tracers12. Finally, while MRI can track CSF flow throughout the entire murine and human brain, it lacks spatial and temporal resolution of perivascular flow.
A new technique, transcranial macroscopic imaging, solves some of these limitations by enabling wide-field imaging of perivascular CSF transport in the entire dorsal cortex of living mice. This type of imaging is done with an epifluorescent macroscope using a multiband filter cube, tunable LED light source, and high-efficiency CMOS camera10. These set-ups are able to resolve PVSs up to 1-2 mm below the skull surface and can detect fluorophores up to 5-6 mm below the cortical surface while leaving the skull entirely intact10. Multiband filters and LEDs that can quickly tune the excitation wavelength enable the use of multiple fluorophores allowing CSF to be labeled with tracers of different molecular weights and chemical properties in the same experiment.
This procedure requires a simple, minimally invasive surgery to expose the skull and place a light-weight head plate to stabilize the head during the imaging session. Tracers can be delivered into the CM without drilling into the skull or penetrating the cortical tissue with pipettes or cannulas9,20. Both CM cannulas and head plates remain stable for several days to weeks and facilitate more complex experimental designs compared to the classical end-point visualization. This protocol describes how transcranial macroscopic imaging is used to study glymphatic system function following acute or chronic injection of fluorescent CSF tracer into the CM of anesthetized/sleeping or awake mice.
All experiments were approved by the University Committee on Animal Resources (UCAR, Protocol No. 2011-023) at the University of Rochester and performed according to the NIH Guide for the Care and Use of Laboratory Animals.
1. Preparing the cisterna magna cannula, head plate, and head holder
2. Surgical procedure
3. Preparing the mouse for imaging
NOTE: The protocol varies depending on whether the imaging experiment will be performed on an anesthetized (start at Step 3.1) or awake (start at Step 3.2) mouse.
4. Infusion of fluorescent CSF tracers
5. Setting up the Imaging Session
6. Transcranial optical imaging experiment
7. Data analysis
NOTE: Matlab-based analyses, such as CSF front-tracking can extract large amounts of quantitative data from the tracer fronts in these imaging datasets10,22. However, these file types can also be easily imported and analyzed in open-source image analysis software like Fiji23.
CSF influx is imaged on an epifluorescent macroscope (Figure 1A), which allows for mesoscopic imaging of CSF tracer transport in the murine cortex. The whole-skull head plate permits the visualization of the rostral nasal bones, both frontal and parietal bones in the center, and the rostral portion of the interparietal bone caudally (Figure 1B). During imaging, the nasofrontal, sagittal, coronal, and lambdoid sutures can be readily identified (Figure 1C). Once the infusion of CSF tracer into the CM begins (Figure 1D), tracer fluorescence is first seen in large pools of subarachnoid CSF at the basal cistern, olfactofrontal cistern, and the quadrigeminal cistern near the pineal recess (Figure 1E, left). CSF tracers then enter the brain along perivascular spaces of the cortical pial branches of the middle cerebral artery (MCA) (Figure 1E, right).
Transcranial optical imaging can be used to study glymphatic function after traumatic brain injury (TBI)3. Mice received a moderate TBI and immediately afterwards a fluorescent CSF tracer (BSA-647) was injected into the CM24. CSF transport was imaged for 60 min after TBI (Figure 1F). Macroscopic imaging shows that tracer is first seen at the olfactofrontal cistern but glymphatic influx along cortical PVSs is completely abolished on the side of the TBI (Figure 1G, Supp. Movie 1). The inhibitory effect of TBI on glymphatic function has been shown using several other tracer quantification methods and could underlie the relationship between TBI and the accumulation of Aβ and tau seen after injury3. Quantitative analysis of in vivo images show that ipsilateral influx area is decreased nearly a third compared to the contralateral hemisphere (Figure 1H).
Figure 1. Transcranial macroscopic imaging. (A) Schematic of the macroscopic imaging set up. (B) Dorsal view of the position of the head plate on the skull. The interparietal bone and the nasal, frontal, and parietal bones are all visible. (C) An exposed mouse skull during imaging before CSF tracer has appeared, clearly showing all cranial sutures of the intact skull. Scale bar: 1 mm (D) Schematic of a lateral view of CSF tracer entering the cisterna magna (CM) and traveling from the basal cistern along the glymphatic pathway. (E, left panel) Macroscopic imaging of glymphatic influx in a ketamine-xylazine anesthetized wildtype mouse at 20 minutes post CM injection (BSA-647; 10 µL at 2 µL/min). CSF tracer is seen in the olfactofrontal cistern around the rostral rhinal vein below the nasofrontal suture, along some parts of the superior sagittal sinus below the sagittal suture, and in the pineal recess surrounding the transverse sinus below the lambdoid suture. (E, right panel) Digital magnification of the image on the left shows the high spatial resolution obtained with these microscopes. CSF tracer travels within the perivascular spaces of the middle cerebral artery (MCA)10. Scale bar: 0.5 mm (F) Experimental timeline. An anesthetized wildtype mouse received a moderate traumatic brain injury (TBI)24 and immediately after a CM injection (BSA-647; 10 µL at 2 µL/min), followed by 60 min of macroscopic imaging. (G) Time-lapse images of CSF tracer transport after TBI (dashed line). Scale bar: 1 mm (H) Influx area (mm2) over each hemisphere during the 60-min experiment, quantified from the ROIs in (G), the hemisphere that received TBI (ipsilateral) and the hemisphere that did not (contralateral). Please click here to view a larger version of this figure.
Supplemental Figure 1. Blueprint of custom head plate. (A, B) Exact measurements (in mm) of the custom head plate used in the transcranial macroscopic imaging protocol. 3D schematics of a hollowed out head plate (C) and a whole head plate (D). Please click here to download this file.
Supplemental Movie 1. Time-lapse imaging of CSF transport after moderate traumatic brain injury to the left parietal bone. Duration: 60 min. Scale bar: 1 mm Please click here to download this file.
We have described a detailed protocol for performing transcranial CSF imaging in live mice using commercially-available fluorescent macroscopes and tracers. This technique is simple and minimally-invasive, yet quantitative. In vivo imaging correlates well with sensitive methods such as liquid scintillation counting of radio-labeled tracers including 3H-dextran and 14C-inulin after CM delivery, and with ex vivo coronal section quantification10,18. Validation with two-photon microscopy demonstrates that CSF tracers seen along cortical blood vessels under the macroscope are primarily located within perivascular spaces of the MCA and its branches10. These CSF inflow pathways are a critical component of the glymphatic system19. Although not covered in this protocol, these set-ups can also be used to image CSF clearance pathways such as the meningeal and cervical lymphatics25,26.
Improvements in head plate design enables chronic, stable, wide-field imaging of the same mouse over time. Head plate shape, size, and weight can be tailored for each specific application. With advances in laser cutting and 3D printing, there are few limitations as to the specifications. Head plating also allows for longitudinal imaging of either anesthetized or awake animals and the ability to image through an intact skull avoids neuroinflammation and edema associated with the placement of cranial or thin skull windows27,28,29. This is an important advantage since stereotaxic delivery of fluorescent tracers through the cortex into the striatum or lateral ventricles using a cranial burr hole greatly reduce glymphatic function20,26. The large gantry and working distances of most commercial macroscopes allow for mice to be fixed to the stage in various configurations, including running wheels or floating mazes. Mice can be trained and habituated to being head fixed to the microscope stage during the 5-7-day recovery period to facilitate awake imaging30.
One of the principal limitations of this method is the low penetration depth of the macroscope compared to two-photon microscopy10. This device is capable of resolving only a few millimeters of the cortical surface below the intact skull. However, while this limits the imaging of processes occurring deeper down in the tissue, it is generally not a problem for glymphatic analyses since the major routes of entry are primarily located around the main arteries of the dorsal cortical surface. Despite being unable to resolve deeper structures, macroscopes with high efficiency scientific CMOS cameras have great fluorescence detection; despite tracer not being located at the brain surface, total fluorescence intensity correlates with the amount of tracer found in the brain at every time point after the start of the CM injection10. These parameters are improved by the use of far-red, near-infrared, or infrared tracers since imaging at these longer wavelengths reduces tissue auto-fluorescence and the scattering of light, and have a superior signal-to-noise ratio than lower emission wavelength fluorophores. The standard macroscope enables imaging of more than one tracer in the same experiment. Depending of the configuration of the macroscope, the filter turret has to rotate between acquisitions, drastically reducing the temporal resolution that can be obtained. This can be improved by the use of tunable LEDs and a multiband filter cube. Despite this improvement, multichannel imaging is not truly simultaneous, since there is a delay in the acquisition while the LED switches between excitation wavelengths. It is possible to achieve simultaneous dual channel imaging using image splitting optics that are compatible with most macroscopic set-ups; however, these sacrifice spatial resolution by dividing the full resolution of the CMOS camera (2048 x 2048 pixel) into two fields of view with half the resolution (1024 x 1024 pixel). While CMOS cameras are quite adequate for this utilization, the use of a CCD camera can be applied to this application as well. An additional factor that reduces temporal resolution is the exposure time required for adequate excitation of the chosen fluorophore, which normally ranges between 50 – 1000 ms. This can be further optimized by using either 2×2 or 4×4 pixel binning, which reduces the exposure time and increases the frame rate, at the expense of spatial resolution. Despite these limitations, transcranial macroscopic multichannel imaging is capable of achieving frame rates between 10-20 Hz with high spatial resolution.
Recent examples in transcranial macroscopic imaging have used aquaporin-4 (AQP4) knock out mice10,20 and platelet-derived growth factor B (PDGF-B) retention motif knockout mice22 to demonstrate the importance of AQP4 and PDGF-B in the glymphatic system. The studies used C57Bl6 wildtype mice to compare to the knockout mouse lines. They transcranially imaged the mice for a duration of 30 min using fluorescent tracers and the results concluded that the knockout lines had dramatically reduced CSF influx compared to wildtypes.
These properties make transcranial optical imaging an ideal technique to study CSF transport, especially between 2 or more cohorts of animals. It permits measurements of intracisternal tracer kinetics in live mice at a micron scale resolution, at a fraction of the cost of other in vivo imaging modalities. This technique allows the study of the glymphatic system in a physiological, non-invasive way, and has been useful in helping elucidate some of the factors that regulate its function in health and disease10,20,25. However, its most exciting attribute is its potential to answer future questions about CSF hydrodynamics.
The authors have nothing to disclose.
This work was funded by the National Institute of Neurological Disorders and Stroke and the National Institute on Aging (US National Institutes of Health; R01NS100366 and RF1AG057575 to MN), the Fondation Leducq Transatlantic Networks of Excellence Program, and the EU Horizon 2020 research and innovation programme (grant no. 666881; SVDs@target). We would also like to thank Dan Xue for expert assistance with graphic illustrations.
0.25% Bupivacaine HCl | University of Rochester Vivarium | ||
100 µL Gastight Syringe Model 1710 TLL, PTFE Luer Lock | Hamilton Company | 81020 | |
A-M Systems Dental Cement Powder | Fisher Scientific | NC9991371 | |
Carprofen | University of Rochester Vivarium | ||
Chlorhexidine | Prevantics | B10800 | |
CMOS Camera | Hammamatsu | ORCA Flash 4.0 | |
Head Plate | University of Rochester | No catalog # | Custom made at the machine shop at the University of Rochester |
High-Temperature Cautery | Bovie Medical Corporation | AA01 | |
Insta-set Accelerator | Bob Smith Industries | BSI-151 | |
Isoflurane – Fluriso | Vet One | 502017 | University of Rochester Vivarium |
Ketamine | Strong Memorial Hospital Pharmacy | ||
Krazy Glue | Elmer's Products, Inc | No catalog #, see link in comments | https://www.amazon.com/Krazy-Glue-KG48348MR-Advance-Multicolor/dp/B000BKO6DG |
Micropore Surgical tape | Fisher Scientific | 19-027-761 | |
Paraformaldehyde | Sigma-aldrich | P6148 | |
PE10 – Polyethylene .011" x .024" per ft., 100 ft. continuous | Braintree Scientific | PE10 100 FT | |
Pump 11 Elite Infusion Only Dual Syringe | Harvard Apparatus | 70-4501 | |
PURALUBE VET OINTMENT | Dechra | ||
Puritan PurSwab Cotton Tipped Cleaning Sticks | Fisher Scientific | 22-029-553 | |
Research Macro Zoom Microscope | Olympus | MVX10 | |
Simple Head Holder Plate (for mice) | Narishige International USA Inc | MAG-1 | |
Single-use Needles, BD Medical | VWR | BD305106 | |
Sterile Alcohol Prep Pads | Fisher Scientific | 22-363-750 | |
Tunable LED | PRIOR Lumen 1600-LED | ||
Xylazine | University of Rochester Vivarium |