In Vivo Electrophysiological Recordings of Brain Activities from Multiple Sites in Rats

All procedures involving animal models have been reviewed by the local institutional animal care committee and the JoVE veterinary review board.

1. Surgery

1. For electrophysiological recordings, use urethane (CAUTION) for anesthesia.
   Caution: Urethane is toxic and carcinogenic, so always adhere to the safety regulations and data sheet given by the substance's manufacturer.
2. Prepare a solution of 200 mg/mL urethane in 0.9% Sodium Chloride (NaCl) medical saline solution.
3. Administer a total of 1.3 g/kg bodyweight urethane intraperitoneally (IP). Depending on the rat strain it might be reasonable to split the dose into two doses with a 15 min interval in between the injections in order to enhance the safety of the anesthesia.
4. Check the depth of anesthesia by using pedal-withdrawal reflex and other suitable reflexes. If the anesthesia is not deep enough to perform surgery, inject 0.15 g/kg bodyweight of urethane IP and wait another 15 min.
5. Apply an eye ointment to prevent corneal dehydration.
6. Constantly monitor respiratory rate and pedal withdrawal reflex during anesthesia. Use a small animal heating pad with temperature control to ensure that a physiological body temperature is maintained throughout the surgery. Before the start electrophysiological recordings, change to a non-electrical alternative (e.g. sodium acetate head pad).
7. Shave the fur alongside the dorsal side of the head to achieve a clean surgical field. Disinfect around the incision site with appropriate surgical disinfectant. Fix the animal in the stereotactic frame.
8. Perform a 2-cm long incision of the scalp in sagittal direction with a scalpel. Use a scalpel to slightly scrape off the skull aponeurosis and disinfect the skull. Use cotton buds soaked in 3% Hydrogen Peroxide (H₂O₂) to remove any remaining tissue.
9. Use an electrocauter or thermocauter to control bleeding, if necessary. Stop bleedings from the skull bone and hypoderm, if the bleeding does not stop spontaneously after 1-2 min and hinders sight onto the skull.
10. Adjust the incisor bar until the head is positioned in flat skull position, which means the bregma and lambda as stereotaxic reference points are in the same plane. This is most important to achieve high surgical precision. Use a standard stereotaxic rat alignment tool, calibrate the designated tip to the bregma under microscopic vision and adjust the incisor bar until the designated points for the bregma and lambda on the tool touch the skull at the same time.
    NOTE: A view from one side with focused light from the other may help to determine this condition. Alternatively, take a stereotaxic holder with a fine cannula and measure the dorsoventral coordinates of Bregma and lambda under microscopic vision. Adjust the incisor bar until the dorsoventral coordinates of Bregma and lambda are the same.
11. Use a stereotaxic holder with a cannula, calibrate to the bregma, and then calculate the position of all drill holes on the skull. Using the stereotaxic holder, mark the positions of the holes to be drilled either by carefully scratching the skull or by using a surgical color marker. The coordinates for this depend on the targets; coordinates with reference to the bregma are given for the hyperdirect pathway in Table 1, including the suggested coordinates for cerebellar reference electrodes.
12. Using a micro drill, carefully drill all holes. For the subthalamic nucleus (STN) and the substantia nigra pars reticulate (SNr), drill a common hole (approximately 2 mm x 3 mm in size). All other drill holes should have a diameter of about 1 mm.
13. Take two fine cannulas (at least 27 G) and bend their tips to form a hooked shape, using a hard surface or tweezers. Use these to remove any debris from the drill holes, and carefully cut and remove the dura mater in the common STN/SNr hole.
14. Flush the drill holes with physiologic saline. Apply a drop of physiologic saline every 15 min to the drill holes to prevent the brain and dura from drying out.
15. Take a microdrill and matching stainless steel micro-screw (e.g. a M 1.2 mm x 2 mm screw), drill a hole, and screw in a micro-screw in between the drill holes of the reference epidural electrodes above the cerebellum, do the same for the M1 epidural electrodes.
16. Slide the self-built Ag/AgCl epidural electrodes into the drill holes for the reference electrodes and M1 electrodes. Guide the electrode tip with fine tweezers and slide it directly below the skull bone into the drill hole.
17. Fix all epidural electrodes with two-component dental acrylic. Make sure not to cover the bregma point nor affect the common STN/SNr hole.
18. Insert the prepared holder with the tungsten microwire electrodes into the stereotaxic frame.
19. Calibrate the most ventral electrode, which is intended to target the STN, to the bregma. Adjust to the calculated position above the common STN/SNr hole and lower the electrodes down to the brain under microscopic vision. Make sure that the tungsten microwire electrodes go inside the brain smoothly.

2. Electrophysiological Mapping and Recordings

NOTE: For this step, a Faraday cage and a multi-channel electrophysiological recording system with recording software capable of online-filtering and online spike-sorting is necessary. Preferably use a system that works with a preamplifier positioned near the head of the animals to keep electrical noise and artifacts to an absolute minimum. Besides the tungsten microwire electrodes, at least one epidural and one reference electrode are necessary to perform recordings of the hyperdirect pathway. It is recommended to insert epidural and reference electrodes pairwise without them touching each other, this helps in case of malfunctioning and allows for different types of referencing in data analysis.

1. Put a mobile Faraday cage above the stereotaxic frame. If only a stationary Faraday cage is available, carefully move the stereotaxic frame into the Faraday cage while making sure deep brain electrodes are not lowered into the brain until the stereotaxic frame is in its final position.
2. Connect the electrodes to the headstage of the electrophysiological setup. Make sure the reference electrodes are connected to appropriate reference channels.
3. Set up the recording software: Bandpass filter (0.05-8,000 Hz) and amplify (gain 1,500-2,000x) the raw data signal. Use an online LFP and spike filter with appropriate settings (bandpass filter 0.05-250 Hz for LFPs, bandpass filter 300-8,000 Hz for MUA). For all filters, use a butterworth-type filter.
4. Set up a spike threshold, if applicable, for online spike sorting. Most recording software allows for setting up of a spike threshold, which is an amplitude value above which a signal is marked as a spike by the software. This threshold can either be determined mathematically as a factor or standard deviation of the mean amplitude of the filtered spike signal, or can preferably be determined by visual inspection of data segments <500 ms and set up as a line above the signal noise in a graphical user interface.
   NOTE: The intention in setting up a spike threshold is to count spikes and sort units in order to provide information on how many neurons are presently recorded and how their spikes are shaped.
5. Slowly lower the tungsten microwire electrodes to 1 mm dorsal of the target, which is STN for hyperdirect pathway. Wait for the signal to stabilize if necessary.
6. For the electrophysiological mapping, advance the electrodes ventrally in steps of 100 µm. At each step, evaluate the firing pattern, firing rate and shape of spikes. Compare those with the typical examples given in Figure 1. Commonly, dense nuclei show fast and continuous spiking over several dorsoventral steps, whereas fiber-rich structures show low firing rates and less homogenous spike activity in subsequent ventral steps.
7. For the hyperdirect pathway, make sure that the most ventral electrode is inside STN.
   NOTE: The STN is reached when a considerable increase in MUA is detected ventral of the Zona incerta. Ventral to the STN, spiking stops almost completely because the electrode has reached the internal capsule. When the most ventral electrode is in STN, the configuration of the tungsten microelectrodes ensures the posterior, second electrode is in SNr. Dorsoventral fine-tuning in small increments might be necessary to record typical MUA in STN and SNr at the same time. Note that the frequency of MUA depends on the number of neurons actually recorded and on the level brain activation.
8. Once the electrodes are in the desired structures, set up online filtering and spike-sorting (see Figure 2), and then start the recording of the data. Typical examples for the different cortical synchronization states that can be identified in the LFP recordings are shown in Figure 3.

Table 1: Stereotaxic Coordinates for the Recording of the Hyperdirect Cortico-basal Ganglia Pathway. All points are measured from the bregma reference point on the skull in mm; n.a.- not applicable.