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Single-Molecule Dwell-Time Analysis of Restriction Endonuclease-Mediated DNA Cleavage
JoVE 杂志
生物化学
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JoVE 杂志 生物化学
Single-Molecule Dwell-Time Analysis of Restriction Endonuclease-Mediated DNA Cleavage
DOI:

09:53 min

February 07, 2021

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Chapters

  • 00:00Introduction
  • 00:31Preparation of Quantum-Dot-Labeled DNA Substrate Materials
  • 03:38Microfluidic Device Construction
  • 05:58Surface Tethering of Quantum-Dot-Labeled DNA Substrate
  • 07:07REase-Mediated DNA Cleavage
  • 07:51Results: Single-Molecule TIRF Experiment for Parallelized Observations of DNA Cleavage Events
  • 09:32Conclusion

Summary

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Using quantum-dot-labeled DNA and total internal reflection fluorescence microscopy, we can investigate the reaction mechanism of restriction endonucleases while using unlabeled protein. This single-molecule technique allows for massively multiplexed observation of individual protein-DNA interactions, and data can be pooled to generate well-populated dwell-time distributions.

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