We, based on knowledge from developmental biology and published research, developed an optimized protocol to efficiently generate A9 midbrain dopaminergic neurons from both human embryonic stem cells and human induced pluripotent stem cells, which would be useful for disease modeling and cell replacement therapy for Parkinson’s disease.
Dopaminergic (DA) neurons in the substantia nigra pars compacta (also known as A9 DA neurons) are the specific cell type that is lost in Parkinson’s disease (PD). There is great interest in deriving A9 DA neurons from human pluripotent stem cells (hPSCs) for regenerative cell replacement therapy for PD. During neural development, A9 DA neurons originate from the floor plate (FP) precursors located at the ventral midline of the central nervous system. Here, we optimized the culture conditions for the stepwise differentiation of hPSCs to A9 DA neurons, which mimics embryonic DA neuron development. In our protocol, we first describe the efficient generation of FP precursor cells from hPSCs using a small molecule method, and then convert the FP cells to A9 DA neurons, which could be maintained in vitro for several months. This efficient, repeatable and controllable protocol works well in human embryonic stem cells (hESCs) and human induced pluripotent stem cells (hiPSCs) from normal persons and PD patients, in which one could derive A9 DA neurons to perform in vitro disease modeling and drug screening and in vivo cell transplantation therapy for PD.
Dopaminergic (DA) neurons can be found in several brain regions, including the midbrain, hypothalamus, retina, and olfactory bulbs. The A9 DA neurons in the substantia nigra pars compacta (SNpc) control behavior and movement by projecting to the striatum in the forebrain and forming the extrapyramidal motor system. Degeneration of A9 DA neurons leads to Parkinson’s disease (PD), which is the second most common human neurodegenerative disorder and currently incurable. Cell replacement therapy is one of the most promising strategies for the treatment of PD1, therefore, there has been a great interest in deriving A9 DA neurons from human pluripotent stem cells (hPSCs), including both human embryonic stem cells (hESCs) and the recent human induced pluripotent stem cells (hiPSCs).
Much research has tried to derive A9 DA neurons from hPSCs using various methods. The earliest reports all generated DA neurons through a neural rosette progenitor stage. By co-culturing with MS52 or PA63-5 stromal cells with or without external growth factors for 2-4 weeks, L. Studer and colleagues and three other groups successfully induced hESCs to produce neural rosettes. They then enriched these rosettes by mechanical dissection or enzymatic digestion for further differentiation. In other reports, researchers generated neural rosettes through embryoid body (EB) floating culture differentiation6-9. Later, researchers established a monolayer based differentiation method10,11, where they plated hESCs and hiPSCs on extra cellular matrix, added different growth factors in the culture to induce the differentiation of hPSCs to DA neurons, which mimics the in vivo embryonic DA neuron development. Although all these studies obtained tyrosine hydroxylase (TH)-expressing cells with some characteristics of DA neurons, the entire differentiation process is time and labor consuming, generally inefficient, and more importantly, the A9 identity of these neurons were not demonstrated in most studies except the one with LMX1a ectopic expression12. Recently, a new floor plate (FP)-based protocol was developed13-16, in which the FP precursors with DA neuron potential were first generated by activation of the sonic hedgehog and canonical Wnt signaling pathways during the early stage of differentiation, and then these FP cells were further specified to DA neurons. Although this protocol is more efficient, there are still some problems; for example, the whole differentiation process takes long time (at least 35 days) and is feeder cell dependent15, or is EB dependent16 or the A9 identity was not demonstrated14.
Here, based on the knowledge from in vivo embryonic DA neuron development and other researchers’ published results, we have optimized the culture conditions for the efficient generation of DA neurons from both hESCs and hiPSCs. We first generated FP precursor cells by activation of the canonical Wnt signaling with small molecule CHIR99021 and sonic hedgehog signaling with small molecules SAG and purmorphamine. These FP cells express FOXA2, LMX1a, CORIN, OTX2 and NESTIN. We then specified these FP cells to DA neurons with growth factors including BDNF, GDNF, etc. The generated DA neurons are of A9 cell type as they are positive for GIRK2 while negative for Calbindin17. This protocol is feeder cell or EB independent, highly efficient and reproducible. Using this protocol, one can derive DA neurons in less than 4 weeks from hESCs or hiPSCs of normal persons for cell transplantation study, or from hiPSCs of PD patients for in vitro modeling of PD or testing potential therapeutic agents for PD.
1. Preparation of Culture Media
2. Culture of hESCs and hiPSCs on MEF Feeder Cells
The H9 hESCs were obtained from WiCell Research Institute and hiPSCs were established in the Reijo Pera laboratory through retrovirus-mediated transduction of Yamanaka factors OCT3/4, SOX2, KLF4, and c-MYC18.
3. Preparation of Cells for Differentiation
Cell Differentiation
An overview of the differentiation protocol is shown in Figure 1. The efficiency of the differentiation protocol presented here relies upon the status of the starting cells. Therefore, it is critical to make sure that, first one removes all the differentiated colonies before dissociating hPSCs into single cells for differentiation, and second, one depletes most, if not all, the MEF feeder cells by incubating the cells on gelatin-coated plates for 30 min, and third, one plates the hPSC single cells at the appropriate density onto Matrigel plate. As illustrated in Figure 2, replated hPSC single cells will expand as clusters during the 48 hr before differentiation, forming around 70% confluence in the plates. Then after differentiation, these cells reach full confluence in as short as 3-4 days, and starting from around D16-D17, these confluent cells start to make some spaces in the plates, and some axons/neurites could already be observed in these spaces and under the cell layers. After being replated at D20, the differentiated cells attached and grew as small clumps. Then during the next 5 days, much more intensive and morphologically intact axons/neurites come out from the clumps, and axons/neurites from different clumps form some connections. During long-term culture, neurons in one clump generate more extensions, get more mature and have more connections with neurons in neighboring clumps.
After 11 days of differentiation, hPSCs could be efficiently converted to FP precursors, and as illustrated in Figure 3, almost all the cells express the FP precursor cell markers NESTIN and FOXA2, and over 90% of the cells express another three markers CORIN, OTX2, and LMX1a. Then after more days of differentiation, the FP precursor cells are specified to DA neurons as they express TUJ1 and TH (Figure 4A). These DA neurons are of A9 identity as they express GIRK2 while are negative for Calbindin (Figure 4B). Immunostaining experiments also show that there are no GFAP+ astrocytes and very few GABAergic neurons (Figure 4C), indicating that the differentiation is exclusively specified toward the DA neuron lineage.
Figure 1. Overview of the differentiation protocol, with growth factors/small molecules and culture medium used for each day. Please click here to view a larger version of this figure.
Figure 2. Morphological changes during differentiation. H9 hESCs were plated as single cells in the appropriate cell density as described, and 48 hr after that, these cells reach about 70% confluence in the plate as colonies (D0). During the first a few days of differentiation, the cells expand rapidly, reaching over 90% confluence after 24 hr of differentiation (D1), and then become confluence after 48 more hr (D3). However, most of these cells still exhibit typical hESC morphology with high nucleus to cytoplasm ratio (D3). As differentiation goes on, cells expand more and gradually lose hESC morphology. At the end of D11 of differentiation, there are more than one cell layers in many parts of the plate, as evidenced by darker color of cells in some areas than the others (D11). Starting from about D17 to D20, some cells died, leaving some spaces in the plate, and some neuron projections could already be observed in these spaces and sometimes under the cell layer (D20). After cell replating at the end of D20 to make more spaces for cells to grow and differentiation, cells aggregate as small clusters, a lot more axons/neurites emerge from these clusters, and axons/neurites from different clusters form some connections in as short as 4-5 days (D25). Scale bar, 200 μm.
Figure 3. Immunostaining for FP markers at early stage of differentiation. H9 hESCs were differentiated for 11 days using the protocol described here. Cells were then fixed with 4% paraformaldehyde, permeabilized with Triton X-100, blocked with donkey serum and then stained for FP precursor cell markers. As shown here, almost all the cells express FOXA2 and NESTIN, and over 90% of the cells express LMX1a, CORIN, and OTX2, indicating a very high efficiency conversion from hESCs to FP cells. Scale bar, 200 μm.
Figure 4. Immunostaining for DA neuron markers at late stages of differentiation. (A) H9 hESCs were differentiated for 25 days, and cells were subject to immunostaining for the pan-neuron marker TUJ1 and the commonly used DA neuron marker TH. As shown here, although there are more TUJ1 positive cells than TH positive cells, all the TH-expressing cells residue in the TUJ1-expressing cells, and the TH-expressing cells represent at least half of all the cells. (B). The H9 hESCs were further differentiated for another 25 days (totally 50 days) and then cells were subject to immunostaining. The results showed that there is higher percentage of TH-expressing cells than that at d25. Almost all of these TH-expressing cells also express GIRK2 while most of them are negative for Calbindin, indicating the A9 subtype identity of the generated DA neurons, which is the cell type that is lost in PD. (C) Immunostaining for cells at D25 of differentiation showed that there are no cells expressing GFAP, and very few cells express GABA. Scale bar, 200 μm.
Human pluripotent stem cells (including both hESCs and hiPSCs) can be differentiated in vitro to generate most, if not all, cell types of our body including DA neurons, which has been demonstrated in previous studies19. Here, based on knowledge from embryonic dopaminergic neuron development20 and published protocols from other laboratories14,15, we optimized the culture conditions for the generation of DA neurons from hESCs and hiPSCs. This protocol is efficient, reproducible and we have successfully applied this protocol described here to H1 and H9 hESC lines and to the hiPSC lines from both the PD patients and unaffected controls.
In our protocol, there are three key steps to obtain the high differentiation efficiency: First, there should be no differentiated hPSC colonies in the cells before directed differentiation. As spontaneous differentiation to all three germ layers is often seen in hPSC culture, it is important to remove these differentiated colonies before dissociating these hPSCs into single cells. Second, MEF feeders should be depleted from the dissociated hPSCs, as previous reports have shown that MEF cells can secret factors that promote self-renewal and inhibit differentiation21. For this purpose, incubating the hPSC and MEF cell mixtures on gelatin-coated plates for 30 min should be enough to remove almost all the MEF cells. Third, the single hPSCs should be plated at the appropriate cell density for differentiation. Increasing the cell density will lead to the death of most cells at around D11 of differentiation, while lowering the cell density will result in the detachment and death of cells in the center of the plate in as short as less than 7 days, although cells on the edge will differentiate well (data not shown). If one observes all these three criteria, it is easy to efficiently obtain DA neurons from hPSCs with our stepwise protocol.
The protocol presented here is mainly based on a previous report by L. Studer and colleagues14 with some modifications. First, the differentiation here was started 48 hr after single cell plating when cells reach only about 70% confluence, while in their report, differentiation was started when cells reach full confluence (3 or more days of culture after single cell plating). In our experience, starting differentiation from confluent cells without a cell passage until day 20 leads to severe cell death during the differentiation process. Second, we replace the expensive SHH protein in their study with SAG, a chlorobenzothiophene-containing small molecule agonist for HH pathway22. Therefore, compared with previously published protocols, this one described here is feeder cell and neural rosette independent, and based mainly on small molecules for FP specification; it is thus less expensive and less time- and labor-consuming. Of course, the limitation of this protocol is the use of KSR for the first days of differentiation. KSR varies from lot to lot, which may affect the differentiation efficiency. Therefore, one should test different batches of KSR to get the one that works best in inducing FP precursors after 11 days of differentiation.
In summary, the differentiation protocol descried here should facilitate: (1) the generation of DA neurons from hESCs or hiPSCs of normal persons for cell replacement therapy for PD; (2) the generation of DA neurons from PD patient iPSCs for in vitro modeling and testing potential therapeutic drugs for PD; (3) the study of the genes/signaling pathways regulating human DA neuron development.
The authors have nothing to disclose.
The authors thank members of the Renee Reijo Pera laboratory for help during development of this protocol and during preparation of this manuscript. This work is supported by California Institute for Regenerative Medicine (CIRM) shared laboratory (CL-00518).
Name of Material/ Equipment | Company | Catalog Number | Comments/Description |
DMEM | Life Technologies | 10569-010 | |
FBS | Life Technologies | 26140 | |
penicillin/ampicillin | Life Technologies | 15140-122 | |
DMEM/F12 | Life Technologies | 10565-018 | |
KSR | Life Technologies | 10828-028 | |
Non-essential amino acid | Life Technologies | 11140-050 | |
b-mercaptoethanol | Millipore | ES-007-E | |
bFGF | R&D Systems | 233-FB-025 | |
mTesR1 | STEMCELL Technologies | 5850 | |
Collagenase IV | Life Technologies | 17104-019 | |
Gelatin | Sigma-Aldrich | G9391 | |
N2 supplement | Life Technologies | 17502-048 | |
B27 supplement | Life Technologies | 17504-044 | |
Neurobasal | Life Technologies | 21103-049 | |
Glutamax | Life Technologies | 35050-061 | |
PBS | Life Technologies | 10010-023 | |
Growth factor reduced matrigel | BD Biosciences | 354230 | |
Accutase | MP Biomedicals | 1000449 | |
Thiazovivin | Santa Cruz Biotechnology | sc-361380 | |
SB431542 | Tocris Bioscience | 1614 | |
LDN-193189 | Stemgent | 04-0074 | |
SAG | EMD Millipore | 566660-1MG | |
Purmorphamine | Santa Cruz Biotechnology | sc-202785 | |
FGF8b | R&D Systems | 423-F8-025 | |
CHIR99021 | Cellagen Technology | C2447-2s | |
BDNF | R&D Systems | 248-BD-025 | |
GDNF | R&D Systems | 212-GD-010 | |
TGF-beta3 | R&D Systems | 243-B3-002 | |
Ascorbic acid | Sigma-Aldrich | A4034 | |
cAMP | Sigma-Aldrich | D0627 | |
Mouse anti human NESTIN antibody | Santa Cruz Biotechnology | sc-23927 | 1/1000 dilution |
Rabbit anti human OTX2 antibody | Millipore | AB9566 | 1/2000 dilutiion |
Goat anti human FOXA2 antibody | R&D Systems | AF2400 | 1/200 dilution |
rabbit anti human LMX1a antibody | Millipore | AB10533 | 1/1000 dilution |
Rabbit anti human TH antibody | Pel Freez | P40101 | 1/500 dilution |
Chicken anti human TH antibody | Millipore | AB9702 | 1/500 dilution |
Mouse anti human TUJ1 antibody | Covance | MMS-435P | 1/2000 dilution |
Rabbit anti human GIRK2 antibody | Abcam | ab30738 | 1/300 dilution |
Rabbit anti human Calbindin antibody | Abcam | ab25085 | 1/400 dilution |
Centrifuge | Eppendorf | 5804 |